Sphingobacterium faecium: MUK51_17105
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Entry
MUK51_17105 CDS
T08637
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfae
Sphingobacterium faecium
Pathway
sfae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MUK51_17105 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfae03400
]
MUK51_17105 (mfd)
Enzymes [BR:
sfae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MUK51_17105 (mfd)
DNA repair and recombination proteins [BR:
sfae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MUK51_17105 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UXD68902
LinkDB
All DBs
Position
3993913..3997248
Genome browser
AA seq
1111 aa
AA seq
DB search
MGIKEIIEKYGQSELTQTLTKAIQAKNPKVQLKGLIGSSDAVVAVASYSLQERPYLFILP
THEDASYFLSDLESLLDKQVLFFPASYRKPFDFTQLDATHVLQRAETLNVLNHASELPKM
VVTYPEAIAEKVINRSDLEKNTLEITEKSKLSIDFINEFLFEYDFDRVDFVYEPGQYAIR
GGIVDIFSFSNDLPYRIEFFGDDIESIRTFEIESQLSVAKIHKVTIVPNVQAKFLSAQNI
SLLEYIDKDAVIWLKDVQFTLDTIKDGNKKATEFWKALSEKEKKDNSEWINPAYGFSDEK
NFNALLFDFPIVEFGKQFFYKPDTTIKFDIHPQPSFNKDFNLLIHNFKENEKNKIENLIF
SDSPKQIERIYKILEDLDKTVSFIPIHKGFREGFRDDNVKLACYTDHQVFDRYYKYKRKK
GYEKSQAITLKDLRDLKPGDYITHIDHGVGKYAGLEKVEVNGKSQEMIRLSYADNDLLYV
NINSLNRISKYSGKEGSIPKMNKLGTDVWDKLKKTTKKKVKDIARDLIMLYAKRKAQTGT
AFSPDSYLQNELEASFIYEDTPDQEKASADVKRDMESPHPMDRLVCGDVGFGKTEIAIRA
AFKAVADSKQVAVLVPTTILAHQHFRTFTERLKDLPCTIDYINRFKTAKQIKETLAKLAE
GKIDIIIGTHRLVSKDVKFKDLGLMIIDEEQKFGVSVKEKLKLLRANVDSLTLTATPIPR
TLHFSLMGARDLSLINTPPPNRQPVQTELHVFNETLIQEAVSFELERGGQVFFIHNRVAD
LKQLGAMIQKLVPNARVGIAHGQLEGDDLEDVMLKFINHDFDVLVATTIIEAGLDIPNAN
TIIINHAHMFGLSDLHQMRGRVGRSNKKSFCYLLSPPLSTLTSEAYKRLSAIEEFSELGA
GFNVAMRDLDIRGSGNLLGGEQSGFIAEIGFEMYHKILDEAIQELKEDEFSEVFADDKDH
KYVSFTQIDTDMEVLIPDEYVTNISERYNLYTEISKLDNEDQLTDFAVSLEDRFGPIPHE
VFELFNTLRLQWFGKQIGFEKISYKKNTLKGYFVNNPKSAYFESDQFGKVLAFVQQHPEI
SNLKEIKKQLRLALSNVNSISYALKLLKEMV
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
gtgggaattaaagaaattatagaaaaatacggtcaaagtgagttaacacaaactttgact
aaagcgatacaagctaaaaatccaaaagtccagttaaaaggtcttatcggttcatcagat
gccgttgtggcggtggcgagttattccttacaagaacgtccctatctttttatccttccg
acacatgaagatgcctcctatttcttaagtgacctcgaaagtctattggataaacaggtt
ttgttttttccggcttcttaccgtaaaccatttgacttcacacaactcgatgcgacacac
gttctgcaacgtgcagaaacattaaatgtattaaatcatgcttctgagcttccaaaaatg
gtggttacctatcccgaagcaatagctgagaaagtcattaacagaagtgatctggagaaa
aacaccttagaaataactgaaaaatcaaaactcagtatcgattttattaatgaatttcta
tttgaatatgatttcgatcgcgtagattttgtttacgaacccgggcaatacgccatcagg
ggtggaattgtagatattttctccttttccaatgatcttccttatcgtattgaattcttt
ggagatgacatcgaaagtatcagaacatttgaaattgaatcccaactctcggtagcaaaa
atccataaagttaccatcgttccaaatgtgcaggctaaatttctttcggcacaaaatata
tccctattagagtatattgacaaagatgcagtgatctggttaaaggatgtccaatttaca
ttggataccataaaagatggaaataaaaaggcaactgaattttggaaggctttgtctgag
aaagagaagaaagataattcagagtggataaatccagcatatggattctcggacgaaaaa
aacttcaatgccttgctctttgattttccaattgtagagttcggaaaacagttcttttat
aagcccgatacaacgatcaaatttgatatccatccgcagccctcgttcaataaagatttc
aatctactgatccataatttcaaagaaaacgaaaaaaataaaattgaaaatttaattttt
tctgattccccgaaacagatcgaaagaatctataaaattttagaagacctggacaaaacg
gtttctttcatccctattcataaaggatttcgcgaaggatttagagacgacaatgtcaaa
ttagcctgttataccgaccatcaagtttttgatcggtattataagtataaacgtaaaaaa
ggctacgaaaaaagccaagcaatcaccttaaaagatttacgcgatctcaaaccaggggac
tacattacccacattgatcatggtgtcggcaaatatgccggtctagaaaaagtcgaagtc
aacggaaaatctcaagagatgattcggttgagctatgccgacaatgacctgctatatgtc
aatatcaactcattaaatcggatttccaaatattcaggaaaagaaggttcgattccgaaa
atgaataaactgggaacagatgtatgggataaacttaagaaaacaacaaaaaagaaagtc
aaagatatcgcccgcgacttgatcatgctctatgcaaagcgtaaagcacaaacagggact
gcctttagccccgacagttatcttcaaaatgagctagaagcttcctttatctatgaagat
acaccagatcaagaaaaagcgtccgcagatgtcaagcgcgatatggagtcgccacatccg
atggatcgactcgtctgtggtgatgttggtttcggaaaaacagaaattgctatccgtgca
gcatttaaagctgttgcagacagcaagcaagtggcggttctggtacccaccacgattctt
gctcatcagcatttccggacttttaccgaacgtcttaaagatcttccttgcaccatcgat
tatatcaatagattcaaaacagcaaaacaaattaaagaaaccttagccaaattagccgaa
ggcaaaattgatatcatcatcggcactcacagattggtaagtaaagatgtcaaattcaaa
gatttgggattaatgattatcgatgaagaacaaaaatttggtgtttcggtaaaagagaaa
ttaaaactattgcgtgccaatgtagattctttgacattaacggcaacgcctataccccgt
actttacacttctccctaatgggagcccgagatctaagtttaatcaatacaccgccgccc
aatcgtcaacctgtacaaacagaattacatgtgttcaatgaaacattgatacaagaagca
gtatcctttgaactcgaacgtggtgggcaagtattcttcatccataaccgtgtagcggat
cttaaacagctcggcgctatgatccaaaaattagtgcccaatgctcgtgtcggcatcgca
catgggcaacttgaaggtgatgatctggaagatgtcatgttgaaatttatcaatcatgat
tttgatgttttggttgccacgaccatcattgaagcgggattagatataccaaatgcaaac
accattatcatcaaccatgcgcacatgtttggtttgagtgacctccaccaaatgcgcgga
cgtgtaggacgctccaataaaaaatcattctgttatctattaagtccacctttatcgacg
ttaacttccgaagcctataaacgtctgtctgctattgaagaattctccgagcttggggca
ggatttaatgttgcgatgcgagatttggatattcgtgggtctggtaatttattaggtgga
gagcagtcaggttttatcgccgaaattggttttgaaatgtatcataaaattcttgacgaa
gcgatccaagaattaaaagaagatgaattctcagaagtatttgccgatgataaagatcac
aaatatgtttcattcacacagatcgataccgatatggaagtattgattcctgatgagtat
gtcactaatatcagcgagcgctataatctgtacactgaaatatcgaaacttgacaatgag
gatcaattgactgattttgcagtatcgctcgaagatcgatttggtccgatcccacatgaa
gtttttgaattatttaatactttacgcttacagtggtttggaaaacagattggatttgaa
aagatatcttataagaaaaatacgcttaaaggttattttgtcaataatccaaagtcagct
tatttcgaatccgaccaatttggaaaagtgttggcatttgtccagcaacatcccgaaatc
agtaatctaaaagaaatcaaaaaacaattgcgattggcattgagtaatgtcaatagcatt
agctacgcgttaaaacttttaaaagaaatggtttag
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