Sulfitobacter faviae: PL335_09850
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Entry
PL335_09850 CDS
T08789
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sfav
Sulfitobacter faviae
Pathway
sfav03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
PL335_09850 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfav03400
]
PL335_09850 (ligD)
Enzymes [BR:
sfav01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PL335_09850 (ligD)
DNA repair and recombination proteins [BR:
sfav03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
PL335_09850 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
WCE65702
LinkDB
All DBs
Position
1988417..1990876
Genome browser
AA seq
819 aa
AA seq
DB search
MAKSPDRLASYNAKRDFEATAEPRGQIGSGAGQSFVVQKHDATRLHYDFRLEWEGVLLSW
AVTKGPSPDPSEKRLAVRTEDHPLDYGGFEGTIPKGQYGGGTVMLWDRGTWMPQGDVAKG
LEDGKLKFTLQGQHMQGGWTLVRMRGREKRENWLLIKERDDYARDLPDGLTKGTARSITT
GRTMAEIAKDAPAKKVADPRPKRKGKNPAFVKPQLATLVADAPEGDGWMHETKFDGYRCL
VSLGKGGTRLFTRSGKDWTDKFGALGAAFDPLPCDRALLDGEVMAAKINGSAFSSLQKAL
KEGHPLVFYAFDLLSLDGEDFRDAPQMDRRARLAQLLSGVPAGGPLRLSEHVIGHGPEVF
DRACKAGAEGIISKRVDAAYSGRRSKSWLKIKCTRRQEFVIIGYSPSDKKGRAFASLLLG
SHEDGELRYKGRVGTGFSEAVMADLARAMTARKTPPASDVPTEVARDAKWVRADLVAEVD
FAEFTDDGVIRHGSFLSLREDKDAGSVTLEEPQEEPKMDSDSKIGGVQISNADRRVFPDA
GCTKGDVARHYERVGERMIDLIGHRPLSLFRCPSGIDGQCFFQKHDSGGMPDALSRVSIE
ESDGDAADYLYATRPESLIAAAQMGSLEYHIWGARVDRLDRPDRLVFDLDPDEGLDWADV
RAAAFELRDALAALGLQSGAIVTGGKGVHVWLALRRTRGWETVKLFAKTFAHVMAAQDPD
RYVATMSKAKRKGRIFIDWLRNERGATAIAPYSLRARTGAPVAVPVTWEELENLDSANGF
RMSDIAARLDRPCPALAVQDDLQSLTDGVIDKLQEWSET
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggccaaatccccagacaggctggccagctacaacgccaaacgcgatttcgaggcaacc
gccgaaccccgtggtcagataggcagtggcgcggggcaaagtttcgtcgtccagaaacac
gacgccacccgactgcactatgactttcgccttgaatgggagggggtgctgctgagttgg
gctgtcaccaaaggcccctcccccgacccgtcggaaaaacgtcttgccgtgcggacggag
gaccatccgcttgactatggcggctttgaggggacgatccccaaggggcaatatggcggc
ggtacggtcatgctttgggaccggggcacatggatgccgcagggcgatgtggcaaagggg
ctggaagacggcaagctcaagttcacgctgcaaggccagcacatgcagggcggttggacg
ctggtgcggatgcggggccgggaaaaacgcgaaaattggctgctgatcaaagagcgcgac
gactatgcccgcgacctgcccgatgggctgaccaagggcaccgcccggtcgatcaccacg
ggccgcaccatggccgagatcgccaaagacgcccccgccaaaaaggtcgccgacccgcgc
cccaagcgcaaaggcaagaaccccgctttcgtcaaaccccagcttgccacccttgttgcc
gacgcgcccgagggcgacggttggatgcatgagacgaagttcgacggctaccgctgtctg
gtgtccctgggcaagggcggcacgcggcttttcacccgctccggcaaggattggaccgat
aagttcggcgcgcttggagccgccttcgatccgctgccctgcgaccgggcgctgttggac
ggagaggtcatggcggccaagatcaacggctcggccttctcttcgctgcaaaaggcgctg
aaagaggggcatccgctggtcttttacgccttcgatctgctgtcactcgacggtgaggat
ttccgcgacgcgccgcagatggaccgccgtgcgcgtctggcgcagttgctatccggcgtg
cccgcaggcgggccgctgcggctgagcgagcatgtcatcggccatggtcccgaagtcttc
gaccgcgcctgcaaagccggagctgaggggatcatctccaaacgcgttgacgcggcctat
tccggcaggcgcagcaaaagctggctcaaaattaaatgcacccggcggcaggaattcgtc
atcattggctattccccctccgacaaaaagggccgcgcctttgcctcgctcctgctgggc
agccatgaggacggcgaattgcgctacaagggccgcgtcggcacagggttttccgaggcg
gtgatggccgacctcgcccgcgccatgaccgcccgcaagaccccgcccgcaagcgatgtg
ccaacggaggtggcgcgcgatgccaaatgggtccgcgccgatctggtggccgaggtcgat
tttgccgagtttaccgacgatggcgtgatccggcacggaagctttctgagcctgcgcgag
gataaggacgcgggcagcgtgaccttggaggaaccgcaagaggagcctaaaatggatagc
gacagtaagatcggcggcgtgcagatcagcaatgccgaccgcagagtcttccccgatgcg
ggctgcaccaaaggtgatgtggcacggcattacgaacgtgtcggggagcggatgatcgac
ctcataggccaccgtccgctgtcgctttttcgctgcccttcggggattgatgggcaatgt
ttctttcaaaaacacgacagcggcgggatgcccgacgcgctgtcacgcgtctcgatcgag
gaaagcgatggcgacgcggcggattacctctatgccacgcgccccgaaagcttgatcgcg
gcggcgcagatgggcagtctggaatatcacatctggggcgcgcgggtggatcggctggac
cgccccgacaggctggtctttgacctcgaccccgatgaagggctggattgggccgatgtc
cgagcggcagcgtttgagctgcgcgatgcgctggcggccctcggcctgcaatcgggggcc
atcgtcaccggcggcaagggcgtgcatgtctggctggccctgcgccgcacgcgcggttgg
gagacggtcaagcttttcgccaagacctttgcccatgtcatggcggcgcaggaccccgac
cgctatgtcgcgaccatgtccaaggccaagcgcaagggccggattttcatcgactggctg
cgcaatgaacgcggtgccacggccatcgcgccctattccctgcgcgcgcgcaccggtgcg
ccggtcgccgtgccggtgacatgggaggaactggaaaacctcgacagcgccaacgggttt
cgcatgagcgatatcgccgcgcggctggatcggccctgccccgcgctggcggtgcaagac
gatctgcaatcgctgaccgatggggtgatcgacaagttgcaggaatggtctgaaacgtga
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