Sinorhizobium fredii USDA 257: USDA257_c36860
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Entry
USDA257_c36860 CDS
T02188
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfd
Sinorhizobium fredii USDA 257
Pathway
sfd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
USDA257_c36860 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfd03400
]
USDA257_c36860 (mfd)
Enzymes [BR:
sfd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
USDA257_c36860 (mfd)
DNA repair and recombination proteins [BR:
sfd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
USDA257_c36860 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AFL52236
UniProt:
I3X8N0
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All DBs
Position
3846645..3850172
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AA seq
1175 aa
AA seq
DB search
MSSTMIPGLDAKRILTATREVTIGPVPSGAEALILADLARAGAPVAYVLSDGQRIGDLEQ
VLGFVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRHKPHPAIVLVTVNA
ALQKISPQDVIESLAFSARPGNQVRMDDLAARLERNGFERVPTVREVGEFAVRGGILDVY
VPGSGEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRTQYL
SLFGAATRDDALYQAVSEGRRYAGMEHWLPLFYDRLETIFDYLEGFRIVTDHLAREAAAE
RSKLILDYYEARHASASPGKSQISQGTPYKPVPPELLYLGAKSFGAALTERNAVRLSPFS
EHEGEARQVLTIEARQGVRWAKTAGEAESENDGTRANVFDQAVKHIAERRAKGAKVVISG
WTEGSLDRLLQVLAEHGLANIRPVKALADLRSLKPGEAASAVLSLESGFEAGDLVVIGEQ
DILGDRMVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLE
LVYADEAKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRI
AAERHTRHAPVLVAHDGVYDEFAARFPYDETEDQLNSIEAVRDDLGGGRPMDRLVCGDVG
FGKTEVALRAAFIAAMNGVQVAVVVPTTLLSRQHFKTFSDRFRGLPIRIQQASRLVGSKD
LALTKKEVAEGKTDIVVGTHALLGSSINFANLGLLIIDEEQHFGVKHKERLKELKTDVHV
LTLSATPIPRTLQLALTGVRELSLITTPPADRMAVRTFISPFDALVIRETLMREHYRGGQ
SFYVCPRLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIV
ESGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLK
VLQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEEE
IHDSGWSPQISVGTPVMIPEVYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLP
IEVQHLLKIVYIKALCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGHIAKQGTLAKIR
PDQSIFFQRELVTPDKRLAGAAMVMTQLATLAKAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagttcgacgatgatccctggtcttgacgcgaagagaattcttacggcgacgcgggaa
gtgacgatcgggcccgtaccttcgggcgccgaagcgctgatcctcgccgatctggcgcgg
gccggcgcgccggtcgcctatgtactttccgacggccagcggatcggcgatctcgagcag
gtgctcggcttcgtggcgcccgacattccggtcctgactttgccgggttgggactgtctg
ccctacgatcgcgtttccccgagcgccgatacgtcggcgcgaagactggccgcgctgagc
gccctgatcgcgcatcggcacaagccgcacccggcgatcgtgctggtgaccgtcaatgcg
gccctgcagaagatctcgcctcaggacgtgatcgaaagcctcgccttctcggcccggccc
ggcaatcaagtgcgcatggacgatctcgccgcccggctggagcgcaacggtttcgagcgt
gtgcccaccgtgcgcgaggtcggcgagtttgccgtgcgcggcggcatcctagatgtctat
gtgccgggaagtggcgagccgctgcgtctcgatttcttcggcgatacgctggagacgatc
cgctccttcgatccggccagccagcgcacgaccgggcaggtccgctccctcgatctcaat
ccgatgagcgaagtgtcgctgacgcccgagacaatcagccatttccgcacgcaatatctc
tccctcttcggagccgcgacgcgtgacgacgcgctttatcaggcggtctccgaaggacgg
cgctatgccggcatggagcattggctgccgctcttctacgatcggctggaaacgatcttc
gactatctcgagggtttccggatcgtcacggatcacctggcgcgcgaggcggcggcggag
cgctcgaagctcattctcgactactatgaggcgcgtcacgcttccgcatcacccggcaag
tcgcagatatcccagggcacgccctacaagcccgtgccgccggagctgctctatctcggt
gcgaaaagctttggcgccgcgctgaccgagcgcaacgccgtgcgtctgtcgccgttttcc
gaacatgagggcgaggcccgtcaggtcctgaccatcgaagctcggcagggcgtccgctgg
gcgaagaccgccggcgaagccgagagcgagaacgacggcacacgcgccaatgtcttcgat
caggccgtgaaacacatagccgagaggcgggcgaagggcgcgaaggtcgtcatttccggc
tggacggagggttcgctcgaccgcctgcttcaggtgctcgccgagcacggcctggccaac
atccgtccggtgaaggctctcgccgatctgcgctcgctgaagccgggcgaggcagcttcc
gcggttctcagcctcgaatcaggcttcgaggccggcgatctggtggtcatcggcgagcag
gatatcctcggcgaccgtatggtgcgccgctcgaagcgccgcaagcgcggcgccgatttc
atcgccgaggtgacgggcctcgatgagggcagctacgtcgtccatgccgaacacggcatc
ggccgcttcgtcggcctgcgcacgatcgaggccgccggcgcgccgcatgattgcctggag
ctcgtctacgccgatgaggcgaagctctttctgccggtggaaaacattgagcttctgtcg
cgctacgggtcggaggggactgatgcgatcctcgacaagctcggcggcgtcgcctggcag
gcgcgcaaggcgaagctcaagaagcggctgctcgacatggcgggcggcctcattcgcatt
gccgccgagcggcacacacggcacgcgccggtccttgtcgcgcacgacggcgtctatgac
gaattcgccgcgcgcttcccctatgacgagaccgaggatcagttgaactcgatcgaggcg
gtccgggacgatctcggcggcggcaggccgatggatcgcctcgtctgcggcgacgttggc
ttcggcaagaccgaggtggcgctgcgcgcggccttcatcgcggcgatgaacggcgtgcag
gtcgccgtggtcgtgccgacgaccttgttgtcgcgtcagcatttcaagacgttttcggac
cgcttccgcgggctgccgatccgcatccagcaagcctcccgcctcgtcggctcgaaggat
ctggcgctgacgaagaaggaagtcgccgaaggcaagacggatatcgtcgtcggcacccat
gcgcttctcggttcctcgatcaacttcgccaatctgggcctgctgatcatcgacgaggag
caacacttcggcgtcaagcacaaggagcgcttgaaggagctgaagaccgacgttcatgtc
ctgacgctctcggcgacccccattccgcgcaccctgcagcttgcgctcaccggcgttcgc
gaattgtcgctgatcactacgccgccggccgaccgcatggcggtgcgcaccttcatctcg
cccttcgacgctctggtcatccgcgagacactgatgcgcgagcactatcgcggcggccag
agcttttacgtctgcccgcggctcagcgacctgtccgagatccacgattttctgaaatcc
gacgtgccggagctgaaggtcgccgtggcgcacggccagatgccggcaaccgagctcgaa
gacatcatgaacgccttctatgagggccgttatgacgtgcttctgtcgacgacgatcgtc
gagtcgggtctcgacgtgccgaccgccaacacgctgatcgtgcaccgcgccgatatgttc
ggtctcgcccagctctaccagcttcgcggtcgggtcggccgctccaaggtgcgcgccttc
gcgctcttcacccttccggtcaacaagacgctgacgggcccggcggagcggcgcctcaag
gtgctgcagtcgctcgacacgctcggtgccggcttccagctcgccagccacgacctcgac
attcgcggcgccggcaacctgctcggcgaggagcaatccggacacatcaaggaggtcggc
ttcgagctctaccagcagatgctggaagaggcggtcgccgagctcaagggtgaagaggaa
atccacgattccggctggtcgccgcagatatcggtcggcacgccggtgatgataccggaa
gtctatgtgccggatctcaacttgaggctcgggctttatcgtcgcctcggtgagctgacc
gacctcaaggaaatcgacggcttcggcgccgaactgatcgaccgtttcggcccgctgccg
atcgaagtccagcatctcttgaagatcgtctacatcaaggcgctttgccgcacggccaat
gtcgagaagctggatgccgggccgaagggcgtcgtcgtccagttccgcaacaaggagttt
cccaatccggctgccctcgtcggccacatcgccaaacaggggacgctcgccaagattagg
cccgaccagagcatcttcttccagcgcgaactcgtcacgccggacaagcgcctcgccggc
gcggccatggtgatgacccagcttgcgacactcgcgaaggcagcttga
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