Sinorhizobium fredii HH103: SFHH103_01364
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Entry
SFHH103_01364 CDS
T01731
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor (TRCF) protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfh
Sinorhizobium fredii HH103
Pathway
sfh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SFHH103_01364 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfh03400
]
SFHH103_01364 (mfd)
Enzymes [BR:
sfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SFHH103_01364 (mfd)
DNA repair and recombination proteins [BR:
sfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SFHH103_01364 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
UB2H
MFD_D3
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CCE95862
UniProt:
G9A6I2
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All DBs
Position
1469818..1473342
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AA seq
1174 aa
AA seq
DB search
MSSTMIPGFDPKRILAATREVTIGPVPSGAEALILADVARAGAPVAYFLSDGQRISDLEQ
VLGFVAPDIPVLTLPGWDCLPYDRVSPSADTSARRLAALSALIAHRHKPHPAIVLVTVNA
ALQKISPQDVIESLAFSARPGNQVKMDELAARLERNGFERVPTVREVGEFAVRGGILDVY
VPGSGEPLRLDFFGDTLETIRSFDPASQRTTGQVRSLDLNPMSEVSLTPETISHFRKQYL
SLFGATTRDDALYQAVSEGRRYAGMEHWLPLFYDRLETIFDYLEGFRIVTDHLAREAAAE
RSKLILDYYEARQASASPAKSQISQGTPYKPVPPEHLYLSAKSFGAGLTERNAVRLSPFS
EHEGEARQVVTVEARQGVRWAKTAGEAEESDGARANVFDQAVKHIAERRAKGAKVVISGW
TEGSLDRLLQVLAEHGLANIRPVKALADLRSLKQGEAASTVLSLESGFETGDLVVIGEQD
ILGDRMVRRSKRRKRGADFIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLEL
VYADEAKLFLPVENIELLSRYGSEGTDAILDKLGGVAWQARKAKLKKRLLDMAGGLIRIA
AERHTRHAPILVAHDGVYDEFAARFPYDETEDQMTSIEAVRDDLGGGRPMDRLVCGDVGF
GKTEVALRAAFIAAMNGVQVAVVVPTTLLSRQHFKTFSDRFRGLPIRIQQASRLVGSKDL
ALTKKEVAEGKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVL
TLSATPIPRTLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQS
FYVCPRLSDLSEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVE
SGLDVPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKV
LQSLDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEETVAELKGDEEI
HDTGWSPQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPI
EVQHLLKIVYIKALCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGHIAKQGTLAKIRP
DQSIFFQRELVTPDKRLSGAAMVMTQLATLAKAA
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgagctcaacgatgatccctggctttgatcccaagagaattcttgcggcgacgcgagaa
gtgacgattgggcccgttccctccggtgccgaagcgctgatcctcgccgatgtggcacgg
gccggcgcaccggtcgcctattttctgtccgacggccagcggatcagcgatctcgagcag
gtcctcggtttcgtggcgcccgacatcccggtcctgaccttgccgggctgggactgtctg
ccctatgaccgcgtttcgccgagcgccgatacgtcagcgcgaaggcttgccgcgctgagc
gccttgatcgcgcatcgccacaagccgcatccggcgatcgtcctggtcaccgtcaacgca
gctctgcagaagatttcgccccaggacgtgatcgaaagcctcgccttctcggcgcgtccg
ggcaatcaggtgaagatggacgagcttgccgcgcggttggagcgaaacggtttcgagcgc
gtgccgaccgtgcgtgaggtcggcgagtttgccgtgcgcggcggcatcctcgatgtctat
gtgccgggcagcggtgagccgctcaggctggatttcttcggcgatacgctggagacgatc
cgctccttcgatccggcgagccagcgcaccaccggtcaggtgcggtccctcgatctcaat
ccgatgagcgaagtgtcgctgactccggagacgatcagccatttccgcaagcagtatctt
tccctcttcggcgcgacaacacgcgacgacgcgctctaccaggcggtctccgagggacgt
cgctacgccggcatggagcattggctgccgctgttctacgatcggctggaaaccatcttc
gactatctcgaaggtttccgcatcgtcacggatcatctggcgcgcgaagcggcggcggag
cgctcgaagctcattctcgactactatgaggcgcgccaagcctcggcgtctcccgccaag
tcgcagatatcccagggcacgccctacaagccggtaccgccggaacacctttatctcagc
gccaaaagttttggtgccggcctaacggagcgcaatgccgtccggctgtcgccgttttcc
gaacatgagggcgaagcccgccaggtggtgaccgtcgaggctcggcagggggtgcgctgg
gcaaagaccgcaggagaggccgaggaaagtgacggcgctcgcgccaatgtcttcgaccag
gccgtgaagcacatcgccgagagacgggcaaaaggcgcgaaggtcgtcatttccggctgg
acggagggctcgctcgaccggctgcttcaggtgctcgccgaacacggcctcgcaaatatc
cgcccggtgaaggcgctcgccgatctgcgctcgctgaagcagggcgaggcggcgtccacg
gtcttgagcctcgaatccggcttcgagacaggcgacctcgtggtcatcggcgagcaggat
attcttggcgaccggatggtgcgacgttcgaagcgccgcaagcgcggcgccgatttcatc
gccgaagtgacgggcctcgacgagggcagctacgtcgtgcatgccgagcacggcatcggc
cggttcgtcggcctgcgcacgatcgaggccgccggcgcgccgcatgattgcctggagctc
gtctatgccgacgaggcgaaactgttcctgccggtggaaaatatcgagctcctgtcgcgc
tacgggtccgagggcaccgatgcgatcctcgacaagctgggcggcgtcgcctggcaggcg
cgcaaggcaaagctcaagaaacggctgctcgacatggcgggcggcctcattcgcatcgct
gctgagcggcacacgcggcacgcgccgatccttgtcgcgcatgatggcgtctatgacgaa
ttcgcggcgcgttttccctatgacgagaccgaggatcagatgacctcgatcgaggcggtc
cgcgacgatctcggcggcggccggccgatggatcgcctcgtctgcggcgacgtcggcttc
ggcaagaccgaggtggcgctgcgtgccgccttcatagcggcgatgaacggcgtccaggtc
gccgtcgtcgtgccgacgaccttgctgtcgcggcagcatttcaagacgttttcggaccgc
ttccgcgggctgccgatccgcatccagcaagcctcccgcctcgtcggctcgaaggatctg
gcgcttacgaagaaggaagtcgccgaaggcaagacggacatcgtcgtcggcacccacgcg
cttctcggttcgtcgatcaagttcgccaatctgggcctgctgatcatcgacgaggagcag
cacttcggcgtcaagcacaaggagcgcttgaaggaactgaagactgacgtgcatgtcctg
acgctctcagcgacgcccattccgcgcaccctgcagcttgcgctcaccggcgttcgcgaa
ctgtcgctgatcaccacgccgccggtcgaccgcatggcagtgcgcaccttcatctcgcct
ttcgacgcactggtgatccgcgagacgctgatgcgcgagcactatcgcggcggccagagc
ttctacgtctgcccgcggctgagcgacctttccgagatccacgatttcctgaaatccgac
gtgccggaactgaaggtcgccgtggcgcacggccagatgccagcaaccgaactcgaagac
atcatgaatgccttctacgaaggccgctatgacgtgcttctgtcgacgacgatcgtcgag
tcggggctcgacgtgccgaccgccaacaccttgatcgtgcaccgcgccgacatgttcggc
ctcgcccagctctatcagcttcgcggccgggtcgggcgctccaaggtgcgcgccttcgcg
cttttcacgcttccagtcaacaagacgttgaccggcccggcggaacggcgcctcaaggtg
ctgcagtcgctcgacacactcggcgccggcttccagctcgccagccacgacctcgacatc
cgcggcgccggcaacctgctcggcgaggagcaatccggccacatcaaggaggtcggtttc
gagctctaccagcagatgctggaagagacagttgccgagctcaagggggacgaggaaatc
cacgataccggctggtcgccgcagatatcggtcggcacgccggtgatgattccggaagaa
tacgtgcccgatctcaatctgaggctcggcctctatcgtcgcctcggcgaactgaccgac
ctcaaggaaatcgacggcttcggtgccgaactgatcgaccgcttcgggccgctgccgatc
gaggtccagcatcttttgaagatcgtctatatcaaagcgctctgccgcacggccaatgtc
gagaaactcgatgcggggccgaagggcgtcgtcgtgcagttccgcaacaaggagtttccc
aatccagccgcgctcgtcggccacatcgccaagcagggaacgctcgccaagatccgcccc
gaccagagcatcttcttccagcgcgaactcgtaacgccggacaagcgtctctccggcgcg
gccatggtgatgacccagcttgcgacgctcgccaaggcggcgtga
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