Streptomyces finlayi: F0344_21815
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Entry
F0344_21815 CDS
T09573
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfiy
Streptomyces finlayi
Pathway
sfiy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfiy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
F0344_21815 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfiy03400
]
F0344_21815 (mfd)
Enzymes [BR:
sfiy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
F0344_21815 (mfd)
DNA repair and recombination proteins [BR:
sfiy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
F0344_21815 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
4HBT_3
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QNE76900
UniProt:
A0A7G7BNI5
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All DBs
Position
4698734..4702261
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AA seq
1175 aa
AA seq
DB search
MSLHGLLDVVVRDPALAEAVKAAADGHRMHVDLVGPPAARPFAVAALARETGRTVLAVTA
TGREAEDLAAALRTLLPPDTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRQDDP
ETGPVSVIVAPVRSVLQPQVKGLGDLEPVALSSGRTADLGEVVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKIADQRSLEIAAHGLWAPPCRELL
LTDQVRGRAAALAEAHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLIDVLPKDSMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLRGIADVRDRARELNMM
WWSVSPFAADDELDEDTLKLRMHAPEAYRGDTARALADTKGWLAEGWRTVYVTEGQGPAS
RTVEVLGGEGIPARLDQDLAEISPSLVHVSCGAIDQGFVDPALKLAVLTETDLTGQRTAT
KDLGRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYVEMVQRTVQNATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYSA
RMAAPGHAFGPDTPWQRELEDAFPYVETPDQLSTIAEVKEDMEKTVPMDRLVCGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFTERYAQFPVNVRALSRFQSDTESKS
TLEGLKDGSVDLVIGTHRLFSAETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYDEKQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMGESALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYSYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVDGSV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRSIASANTEDDIRAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGPNIRFAPVELRESQELRLKRLHPKTVIKPTAH
QILVPRPTAGRIGGKPVVGRELLAWTGEFLTTILG
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggatgtcgtcgtacgtgacccggcgctcgccgaagcggtg
aaggccgccgccgacggccaccggatgcacgtcgacctggtgggcccgccggccgcccgg
ccgttcgccgtggccgcgctggcccgtgagacgggccgcaccgtgctggccgtcaccgcg
accggccgcgaggccgaggacctcgcggcggcgctgcgcacgctgctgccgccggacacg
gtcgcggagtacccgtcctgggagaccctgccccacgagcggctctcgccgcgctcggac
accgtcggccgccgcctcgccgtactgcgcaggctggcgcacccccggcaggacgacccg
gagaccggcccggtcagcgtgatcgtcgcgcccgtgcgttcggtgctccagccgcaggtc
aaggggctcggcgacctggagcccgtggcactgagcagcggtcgcaccgccgatctgggt
gaggtcgtcgaggcgctcgcggccgccgcgtactcccgggtcgaactggtcgagaagcgt
ggcgagttcgcggtacgcggtggaatcctggacgttttcccgccgaccgaggagcacccc
ctgcgggtggagttctggggcgacgacgtcgaggagatccgctacttcaagatcgccgac
cagcggtcgctggagatcgccgcgcacggtctgtgggcgccgccctgccgtgagctgctc
ctcactgaccaggtccgcggccgggccgccgccctcgccgaggcccatccggaactgggc
gagctgctgaacaagatcgccgaggggatcgccgtcgagggcatggagtccctggccccg
gtgctggtcgacgacatggagctgctgatcgacgtcctgccgaaggactcgatggcggtg
gtctgcgacccggagcgggtgcggacgcgggcgagcgacctggtggccacgagccaggag
ttcctccaggcgtcctgggcggccacggcgggcggcggcgaggccccgatcgatgtcggc
gcggcctcgctccggggcatcgcggacgtccgcgaccgggcccgggagctgaacatgatg
tggtggtcggtctccccgttcgccgccgacgacgagctggacgaggacaccctcaagctc
cggatgcacgcccccgaggcgtaccggggcgacaccgcccgcgcgctcgccgacaccaag
ggctggctcgcggagggctggcgcacggtgtacgtcaccgaggggcagggcccggcctcc
cgtaccgtcgaggtcctgggcggcgagggcatccccgcccgcctggaccaggacctcgcc
gagatctcgccgtccctggtccatgtgtcgtgcggcgccatcgaccagggcttcgtcgac
ccggcgctcaagctcgccgtgctgaccgagaccgacctgaccggccagcgcacggccacc
aaggacctcggccggatgccggcccgccgccgcaagaccatcgacccgctgacgctggag
gcgggcgactacatcgttcacgagcagcacggtgtgggccgctacgtcgagatggtgcag
cgcacggtgcagaacgccacacgtgagtacctcctcgtcgagtacgcccccgccaagcgc
ggccagccgggcgaccgcctgtacatccccaccgaccagctggagcaggtcaccaagtac
gtgggcggcgaggcccccaccctgcaccggctcggcggcgccgactggaccaagaccaaa
cagcgcgcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctctactcggcg
cggatggcggcccccggccacgccttcggcccggacaccccgtggcagcgtgagctggag
gacgccttcccgtacgtggagacgcccgatcagctgtccacgatcgccgaggtcaaggag
gacatggagaagacggtccccatggaccggctggtctgcggtgacgtcggttacggcaag
acggagatcgccgtgcgcgcggcgttcaaggcggtccaggacggcaagcaggtcgccgtc
ctcgtgcccaccacgctcctcgtccagcagcacttcggtacgttcaccgagcggtacgcc
cagtttcccgtcaacgtacgggcgttgagccggttccagtccgacacggaatcgaagtcc
accctggagggcctgaaggacggttcggtcgacctcgtcatcggcacgcatcgcctcttc
tccgccgagacgaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctccgtgccaacgtcgacgtgctgaccatg
tccgcgacgcccatcccccgtacgctcgaaatggccgtcaccggcatccgcgagatgtcg
acgatcacgacaccgccggaggagcgccaccccgtcctcaccttcgtcgggccgtacgac
gagaagcagatcggcgccgccgtccgccgtgaactgctgcgggagggccaggtcttctac
atccacaaccgggtggagtcgatcgaccgcgcggctgcccggctccgcgagatcgtgccg
gaggcccgtatcgccacggcgcacgggcagatgggcgagagcgcgctggagcaggtcgtc
gtggacttctgggagaagaagttcgacgtcctcgtctccacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggtgacaacttcggcctctcg
cagctgcaccagctgcgcgggcgcgtcggccgtggccgggaccggggctactcctacttc
ctgtacccgccggagaagccgctcaccgagaccgcccacgagcgtctggcgaccatcgcc
cagcacacggagatgggcgcgggcatgtacgtggccatgaaggacctggagatccgcggc
gccggaaacctgctcggcggcgagcagtccgggcacatcgcgggtgtcggcttcgacctc
tacatccgcatggtcggcgaggcggtggccgactaccgggccgcggtcgacggcagcgtc
gaggaggagcccccgctggaggtcaagatcgagctcccggtcgacgcccacgtgccgcac
gactacgcccccggcgagcggctccgcctccaggcgtaccgctcgatcgcctccgccaac
acggaggacgacatcagggcggtacgcgaggaactcaccgaccgctacggcaagctcccc
gaaccggtcgagaacctcctcctggtcgccggcctgcgcatgctggcccgtgcctgcggg
gtcggcgagatcgtcctccagggcccgaacatccgcttcgccccggtggaactgcgcgag
tcccaggaactgcgcctgaagcgcctccacccgaagacggtcatcaagccgaccgcccac
cagatcctggtcccccgccccacggcgggacgcatcggcggcaagccggtggtcggccgc
gaactcctggcgtggaccggggagttccttacgacgatcctggggtag
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