Scleropages formosus (Asian bonytongue): 108919978
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Entry
108919978 CDS
T04919
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108919978 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108919978 (lig4)
Enzymes [BR:
sfm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108919978 (lig4)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108919978 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
RTT107_BRCT_5
LIG3_BRCT
mRNA_cap_enzyme
ATG17_like
Thioredoxin_2
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
108919978
NCBI-ProteinID:
XP_018583938
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All DBs
Position
14:complement(12012879..12017958)
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AA seq
909 aa
AA seq
DB search
MEASTSSEDVPQTSVAAQVPFRHLCTTLEKIQKAKARPEKAKCLSDFIDSWRKFHSALHK
DKPKTPDSFYPALRLIVPQFERERMAYGIKESMLAKLFIEVLGLPKNGPESNKLLNYRAP
TTSQGEAGDFAIMAYFVLKKRCMSQGNLTIKEVNDFLDSVAVNNAAKKKELVKKNLLHLI
THSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAVELYNVTTDLCKVCQKLHDPSVNL
SDVSIELFSAFKPMLAAVANIKQVEKQMSNHSFYIETKLDGERIQLHKDGDVYKYFTRNS
FEYTQQFGASPLEGSLTPYIHDVFKPHVIRCILDGEMMAYNPTAETFMQKGSKFDIKRLV
EDSDLQTCFCIFDVLLVNDQKFGHETLKKRYETLHTVFTPIKGRMHLVPKKEARTMQEVV
NALNEAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDLLILGGYWGKGT
RGGMISHFLCGVSETPKPGEKPTVFHSLCRIGSGYTMKELYDLGLKLAKHWKLFRKTNPP
ASILCGTEKPEVYIDPCNSVIIQVKAAEIVGSDMYKTNCTLRFPRIERIREDKEWHQCMT
LDDLDQFRNKCSGKLASRHLCVNEDEPEKKKRKVVAKPKKVIGIIDHFKSQDLSGVTKES
SMFEDVEFCIMNGSEEHPKADLEKGVVKCGGNVVQNPSQDTYCVIAGVVNMRVKNLISCN
QHDVVWAPWLLECLEKKQFVPWQPRHMIHMSPSTQQHFAKEYDKFGDSYYADTNEQELKE
VFSRVDIKDKEMPSIANVESQYALDDLPTNMFRPFRVYLDRCTEIGDPRSLICGTCLDIR
ALEFRFHGGTVVSELTEGVTHVIVAEETRLLDFRTLRRLFAKKFKIVRESWVTDCIKAGH
LLNDNEYLV
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atggaagcatcaacaagtagtgaagacgtgcctcagacatctgtagctgctcaggttcca
tttcggcatttatgtacaaccttagagaaaatacagaaagcgaaggctcggccagagaaa
gccaagtgtctctccgatttcattgattcatggcgaaagtttcattccgctcttcacaag
gacaaaccaaagacccctgactccttctatccagccttacgtctcatcgttccccagttt
gagagggaacggatggcttatgggatcaaggaaagcatgttagcaaaactgttcattgaa
gtcttgggccttccaaaaaatggtccagagtcaaataaacttctcaactatagagctcca
actacgtctcagggggaggcaggtgattttgccatcatggcttactttgttttgaagaag
aggtgtatgagccagggaaacctaactattaaagaggtaaacgatttcttggattcagtt
gctgtcaacaatgctgctaaaaagaaggagcttgtcaagaaaaaccttctacatctgata
acgcatagctcagccttggagcagaagtggctaatcagaatgatcctgaaagacatgaag
ttgggcataagcaaagagacagtgcttcaagtgttccatccagatgctgtggagttgtac
aatgtcacaactgatctttgcaaagtgtgccagaagcttcatgatccttctgtgaatctt
agtgatgtgtccattgagctgttttcagctttcaagcccatgctagcagctgttgccaac
atcaagcaggtagagaagcaaatgagcaatcacagtttctatattgagacaaagctggat
ggtgaacgcatccaactgcataaagatggagatgtgtacaagtattttacacgcaactct
tttgaatacactcaacaatttggggcatccccgttagaaggctctttgaccccttacatt
catgatgtcttcaagcctcatgtgataaggtgcatcttggatggtgagatgatggcatac
aaccccactgctgaaacctttatgcaaaagggaagcaagtttgatatcaaaaggctagtt
gaggattctgatctccaaacctgtttttgcatctttgatgttcttttagttaatgaccag
aaatttggacatgagacactaaagaaacgttatgaaactctgcatactgtcttcactcca
ataaagggccgaatgcatttggtgccaaaaaaagaagctcgaaccatgcaagaagtggtg
aatgccttaaatgaagcaatcgacaacagagaagaaggaatcatggtaaaagatccctta
tctatttataaaccagacaagagaggagaagggtggctcaagataaaaccggaatacgtg
gatggtctgatggatgagcttgacctgttgatccttgggggctactgggggaaaggaact
cgaggtgggatgatttctcattttttgtgtggtgtatcagaaactcctaaacctggagag
aagccaacagtgtttcattctctctgccgcataggttcaggctacaccatgaaggagctg
tatgatttgggcctaaagcttgctaagcactggaagctcttccgtaaaacaaatccgcca
gcatccatactatgtggcacagagaaaccagaagtttacattgatccctgtaattcagtg
attattcaggttaaggctgctgaaatagtgggtagtgatatgtataaaacaaattgcact
ctccgttttcctaggattgagaggatcagagaagataaggaatggcaccaatgcatgaca
ctagatgatcttgaccagttcaggaataagtgctctggaaaactagcatcaaggcaccta
tgtgtcaatgaagatgaaccagaaaagaagaagcggaaggtggtggcaaagccaaagaag
gtcattggtattattgaccactttaaatctcaggatctgtctggtgtcacaaaagagtct
agcatgtttgaagatgtggagttctgcatcatgaatggaagtgaggagcaccccaaggca
gacttggagaaaggagtagtgaaatgtggtggaaatgtagtccagaatccaagtcaggac
acttactgtgtgattgcaggtgtggtgaacatgagggtaaagaacctgatttcctgcaac
cagcatgatgtggtctgggctccctggctgctggagtgtttggagaagaagcaatttgtg
ccatggcaaccccgtcacatgattcatatgtcgccatccacacagcagcactttgccaag
gagtatgacaagtttggggacagttactatgctgacaccaatgagcaggagttgaaggag
gttttctctagggttgatatcaaggataaagagatgccatccattgccaatgtggagtca
cagtatgccttggatgacttgcctaccaacatgttcagaccattccgagtttatttagac
cgctgcaccgaaattggagatcccaggagcctcatatgcgggacttgcttggacatacgg
gctctggagtttcggttccatgggggaacagtggtgtctgagctgacagaaggggtcact
catgttatcgttgctgaggagactcgactcctcgatttcagaacactgagaaggctgttt
gccaaaaagtttaaaattgtgagagaatcctgggtgacagactgtattaaagcaggacat
ttactgaatgacaatgaataccttgtgtaa
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