Scleropages formosus (Asian bonytongue): 108923698
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Entry
108923698 CDS
T04919
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108923698 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sfm03021
]
108923698 (smarcc1)
03036 Chromosome and associated proteins [BR:
sfm03036
]
108923698 (smarcc1)
Transcription machinery [BR:
sfm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108923698 (smarcc1)
Chromosome and associated proteins [BR:
sfm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108923698 (smarcc1)
PBAF complex
108923698 (smarcc1)
GBAF(ncBAF) complex
108923698 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
BRCT
Motif
Other DBs
NCBI-GeneID:
108923698
NCBI-ProteinID:
XP_018590149
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All DBs
Position
18:complement(1153059..1169937)
Genome browser
AA seq
1137 aa
AA seq
DB search
MAAAAAAATAAGGTSSWGSTGAQGASGMSVFRKKDGGPSSKYWESGETVSQLEPVRLWVG
KHYKKYVQADSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKSFLDFKPGGALCH
ILGSVYKFRSEQGWRRFDLQNPSRMDRNVEMFMNVEKTLVQNNCLTRPIVYIASDMDQKQ
AVKLKDIIKRHQGSITEDKSKATHHIYPSPGQLDEEEWLRPVMRKDKQVLVHWGMYPDSY
DTWVPANDVEGDVEEPPSQDKPWKVHAKWVLDTDAFNEWMNEEDYEVDENRKPVSYRQRI
FLREEESSRTPDRKDRKAAASSRKRRRSPSPPSESRKKGNKKGSSGPGWKRRGHREEEEP
EEDVSKDMEDPSPVPNMEEVTLPKNVNPKKDSENTPVKGGTVADLDEQEDDSMVSGGKED
EESGKTEGSRLLDSSEDNVTEQMHHIIIPSYAAWFDYNSIHEIERRALPEFFNGKNKSKT
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDAES
RPLPMGPPPTSHFTVLADTPSGLMPLHLRPPQIPASQQMLNFPEKGKEKQMDLQNFGLRT
DVYSKKNPKTKGGREWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIE
DPYLESPDTTLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVAAAAAKAALEEFSRVRE
EVPAELVEAHVKKVQEAARTTGKLDPAFGLESSGIAGTAPEEPEKTESAEAEKMDTDTDS
QQVAKAESRDEAERPGESAEGEHVNSETTEPQGEKEEGESEGAEEGESEGVEEEKDKVEA
MDTEAPKEVDGDESQKKLLPDVGEGNIATAAAAALASAATKAKHLAAVEERKIKSLVALL
VETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLRYAEMKARQQME
QQQAAAAAAAAAAAAAHNPGGHPGGHPGTLPAGHPGGHSAGHPGAHPGGHPGGHHGPPPG
MHPHPAPGYPPMHHPMAPYHPPHAGPMGGPAQPMPSRMMPGGPQGGQPQPNMPPMMGPRH
PGAPNGLYATPPMSQPDGLPPAPVGPPVGAPVGPPVGPPAGPSVGPSIGPASRPPEN
NT seq
3414 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctgcggcggcgacggcagcgggtggaacgagttcgtggggctcgacg
ggcgctcagggagccagtggaatgtctgttttcaggaagaaggacgggggtccgtcctcg
aaatactgggagagcggagagacggtgtcccagctggagcccgtgcgcctatgggtcggg
aaacactacaaaaagtatgtccaggcagactctccatcgagcaagtcactggctggcctg
gtagtgcagctgctgcagttccaggaggatgcgttcggcaggagggtgaacaacccagcc
ctcaccaagctgcctgcaaagagcttcctggactttaagccaggaggtgcactgtgtcac
atcttgggatccgtctacaaattcaggagcgagcagggctggcgacggttcgacctgcag
aacccctctaggatggataggaacgtggagatgtttatgaatgtggagaagacactcgtg
cagaacaactgccttacgcgccctatcgtgtacatagcgtcagacatggatcagaaacaa
gctgtgaagctgaaggacattatcaagaggcaccagggctccatcacagaggacaaatcc
aaggccacacaccacatctatccatccccaggacagctggatgaagaagagtggctccgc
cctgtgatgcgcaaagacaagcaggtgctagttcactggggcatgtaccctgatagctat
gatacttgggtgccagccaatgacgtagaaggagatgtggaggagccacccagccaggac
aagccctggaaagttcatgctaagtgggttctggacacggacgccttcaatgaatggatg
aatgaggaggactatgaggtagatgagaacaggaagccagtgagctaccgtcaacgcatc
ttcctacgagaggaagagtcttcccgtacacctgatcgcaaggaccgcaaggcagccgcc
agcagcaggaagaggaggcgctcaccatcgcccccctcagaatcacgcaaaaagggcaac
aagaagggcagttctggccccggctggaagcggcgaggccatcgtgaagaggaggagcca
gaggaagatgtttccaaagacatggaggacccatctcccgtgcccaacatggaggaggtc
accctgcccaagaatgtgaaccctaagaaggacagtgagaacacccctgtgaagggtggt
acagtggctgatctggatgaacaggaagatgactccatggtttccggtggcaaggaagat
gaggagtcaggcaaaacagaggggagccgtcttctggattcgagcgaggacaatgtgaca
gagcagatgcaccatataattatcccaagctatgccgcctggtttgactacaacagcatc
catgaaattgagaggcgtgctctgccagagttcttcaatggcaagaacaagtccaaaact
ccggagatatacctggcctataggaatttcatgattgacacataccggttgaaccctcag
gagtacctcacctccacgtcctgccgcaggaacctcaccggggatgtatgcgcaataatg
agggttcatgccttcctggagcagtggggtctggtgaactatcaggtggatgcggagagt
cgacccctgccaatgggtcctccgcccacctctcatttcactgtgctggctgatacacca
tcaggcctgatgcccctgcacctccgcccaccgcagattccagcctcccaacagatgttg
aacttccctgagaaagggaaggagaaacaaatggacttgcagaactttggcctgcgcact
gacgtgtactccaagaagaacccaaagactaaaggtggcagggaatggactgaacaggaa
accctgcttcttctggagggcctggagatgtacaaagatgactggaacaaagtgtcggag
catgtggggagccgcacacaggacgagtgtatcctgcacttcctacggctgcccattgag
gacccctacctggaaagtccagacaccacactgggcccactggcctaccagcccgtgccc
ttcagccagtcgggaaaccccgtcatgagcaccgtggcatttctggcctctgtggtagac
ccccgtgtggcagccgcagcggccaaggctgctctagaggagttttcacgggtgcgggag
gaggttccggcagagctggtggaggcacacgtcaagaaggtgcaagaggcggcacgcacc
actggcaaactggaccctgcctttgggctggagagcagcggtattgctggaacggcccca
gaggagcctgagaaaacggagtccgctgaggctgagaagatggatacagatacagattcc
cagcaggtagccaaggccgaatcaagagacgaggcagagaggcctggggagtcagcagaa
ggcgagcatgtcaacagtgaaaccactgaaccacagggtgaaaaagaggagggggaaagt
gaaggagccgaggagggagagagtgagggagttgaagaggagaaggacaaggtggaagcc
atggacacagaggctcccaaagaggtagatggggatgagagccagaagaagctgctgcct
gacgttggagagggaaatattgccactgctgcggctgcagctctggcatctgctgccacc
aaggccaagcacttggctgcagtggaagagcggaaaataaagtccctggtggccctgctg
gtggagacccagatgaaaaaactggagatcaagctgaggcattttgaggagctggagacc
atcatggaccgtgagaaggaagcgctggaactacagaggcagcagctcctgacggagcgc
caggcattccatatggagcagttgcgctatgctgagatgaaggctcgccagcagatggag
cagcagcaagctgctgctgctgctgccgccgccgccgccgctgctgcacataaccctggg
ggacaccctgggggacaccctggaaccctccctgctggacaccctggagggcattctgct
ggccatcctggagcacaccctggaggtcaccctgggggccaccatggccccccaccaggc
atgcacccccacccagcccccggctacccacctatgcaccatcctatggccccctaccac
cctcctcatgcaggtcctatgggaggaccagctcagcccatgccaagtcgtatgatgccc
gggggtcctcaaggtggacagccccagcccaacatgccccctatgatgggaccaaggcac
ccaggtgctcccaatggcttgtacgccacccctcccatgtcgcagcccgatgggttgcca
cctgccccagttggaccaccagtgggagcaccagtcggaccaccagtaggaccaccagct
ggaccctctgtgggaccatcaattggtcccgcatcccgtcccccagagaactaa
DBGET
integrated database retrieval system
