Scleropages formosus (Asian bonytongue): 108930585
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Entry
108930585 CDS
T04919
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03013
Nucleocytoplasmic transport
sfm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108930585 (upf1)
03015 mRNA surveillance pathway
108930585 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108930585 (upf1)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108930585 (upf1)
5.6.2.5 RNA 5'-3' helicase
108930585 (upf1)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108930585 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
108930585 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
108930585
NCBI-ProteinID:
XP_018601419
LinkDB
All DBs
Position
9:6669515..6686302
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AA seq
1101 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGILQNGGVDDAVAKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNT
SKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPA
KADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITA
QQINKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKK
LKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIG
HVIKVPDNYGDEIAIELRSSVGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVS
GYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGK
TVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSF
LALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCV
GAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKA
GLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQ
WPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEG
QRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRR
LNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRK
LVNTINPGARFMSTAMYDAREALIPGSVYDRSSTGRPSNMYFQTHDQIGMIGAGPSHVAA
MNIPIPFNLVMPPMPPPGYMGQGNGPATGRGALKGKAGRGGRQRNRGIGNHGSGQANLPN
SQASQDVVSQPFSQGPLTQGYVSMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQ
DSTYQGERAYQHGGVTGLSQY
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggccgagctcacagactctaaccttcctggacaccgaggaa
gcggagttactgggagccgatacccagggatcggagtttgagttcaccgatttcacgttg
ccgagccagacgcagacacaaggccagacacagagtcaactggacaaccaggtgaacggt
cctgacggcattctgcagaatggaggcgttgatgatgctgtggcgaagacgagccagctt
ctggccgaactcaactttgaggaggatgaagaagacacgtattacaccaaagacctccct
gtccatgcttgcagctactgtggtatccatgatcccgcatgcgtggtctactgtaacacc
agcaaaaagtggttctgcaatggacgtggcaacacctctgggagccacattgtgaaccac
ttggtccgtgctaaatgcaaggaagtgactctccacaaagacggccccctgggggagacg
gtgctggagtgctacaattgtggctgtcgtaatgtcttccttctgggtttcatcccagcc
aaggctgactctgtagttgtgctcctctgcaggcagccttgtgccagtcagagcagcctg
aaggacatcaactgggacagctcccagtggcagcccctgattcaggaccgctgcttcctg
tcgtggctggtaaagatcccgtctgagcaggagcagctcagggcccgacagatcactgcc
cagcagatcaacaagctggaggaactctggaaggaaaatcccactgcaaccttagaggac
ctggagaagcctggggtagatgaggaaccccagcatgtactgctgcgctatgaggatgcc
taccagtaccaaaacatttttggacctcttgtcaagctggaggctgactatgacaaaaag
ctaaaagagtcccagacccaggataacattacggtcaggtgggaccttgggctgaataaa
aagcggattgcttatttcacactacccaagacggattcaggtgatatgcgtctgatgcag
ggagatgaaatctgtctacggtacaaaggagatcttgcccctctttggaaggggattggg
cacgtcatcaaagtcccagacaactacggtgatgagatagccatcgaattgagaagtagt
gttggagctcctgtggaagtgccgcataatttccaagttgattttgtgtggaagtcaaca
tcttttgacagaatgcaaagtgctttgaagacctttgctgtggatgaaacatctgtgtca
gggtatatctatcacaagctcctgggccatgaagtagaggatgtcatcattaagtgtcag
cttcccaagcgtttcactgcccagggactgcctgaccttaaccattcccaggtgtatgct
gtgaagactgtgctccaacgacccctcagccttatccaaggcccccctggtactgggaaa
actgtaacttctgccaccattgtctaccaccttgcaagacagggcaatgggcctgtactg
gtgtgtgctccaagtaatattgctgtggaccagctgactgagaaaatccaccaaactggt
ctgaaagtggtgaggctctgtgccaagagccgagaagctattgattcccctgtgtcattc
ctagccctgcacaatcagatccgcaatatggacagcatgccagagcttcagaaattgcag
cagctcaaagatgagacaggagagctttcgtctgcagatgagaagcgctaccgtgcattg
aagcgcactgctgagcgagagctccttatgaatgctgatgtgatctgctgtacctgtgtg
ggagctggagatccccgtctggcgaagatgcaattccggtccatcttgattgacgaaagc
actcaagctacagagcctgagtgcatggtgcctgttgtgctgggagctaagcagctcatc
cttgtgggagaccactgccagctgggtccagtagtgatgtgtaagaaggcagcaaaagct
ggcctttctcagtccctatttgaacgactagttgttctgggaatacgtcccattcgcctg
caagtgcagtaccgcatgcacccagccctcagcgccttcccctccaacatcttctatgaa
ggttccctgcaaaatggtgtcactgctgctgatcgcatcaagaaaggctttgacttccag
tggccacagccagacaagcctatgttcttctatgttacccaaggacaggaagaaattgca
agctcagggacttcatatctgaatagaactgaagctgccaatgtggagaagattaccaca
aaactgctgaaagctggagcaaagccagatcagataggcatcatcaccccctatgagggt
caacgatcctatctggtgcagtacatgcagttcagtggctcccttcacaccaagctttat
caggaagtggaaattgctagtgttgatgccttccaaggcagagaaaaggactttattatt
ctgtcatgtgtcagagccaatgaacaccagggaatcggtttcctgaatgacccacggcgt
ctcaatgtggctcttacaagggcaaggtatggagtgatcattgtggggaatccaaaagcc
ctttccaagcagccgctgtggaaccacctgctcaattactacaaagaacagaaggtgctg
gtggaggggccgctgaacaacctgcgggaaagtctcatgcagttcagcaagccccggaaa
ctggtcaacaccatcaaccctggagcccgtttcatgagtactgccatgtatgatgctcgt
gaggcccttattcctggttctgtgtatgaccgcagcagtacagggcgtccgtcaaacatg
tactttcagacacatgatcagattggcatgattggtgcaggccctagccatgtggctgcc
atgaacatacctattccctttaacctggtcatgcctccaatgccccctccagggtacatg
ggccaaggcaatggtccggcaacaggccgtggagctctgaaagggaaggcagggcgtggt
gggcgccagcgaaatcgtggaattggcaaccatggtagtgggcaagcaaacttgcccaac
agccaggctagccaggatgtagtgtcccaacccttctctcaggggcccctcactcaagga
tatgtctccatgagccagccgtcccagatgagccagccaggcctgtctcagcctgaactg
tcacaggacagttatcttggagatgagttcaagtcccagattgatgtggctttgtcccag
gactctacttaccagggtgaacgtgcataccaacatggtggggtgactggactgtcacag
tactag
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integrated database retrieval system
