Scleropages formosus (Asian bonytongue): 108936199
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Entry
108936199 CDS
T04919
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sfm03009
]
108936199 (ddx55)
Enzymes [BR:
sfm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108936199 (ddx55)
Ribosome biogenesis [BR:
sfm03009
]
Eukaryotic type
Pre-60S particles
Helicases
108936199 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Helicase_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
108936199
NCBI-ProteinID:
XP_018610921
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All DBs
Position
6:30994123..31002904
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AA seq
608 aa
AA seq
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MMETATDGRWETLPVKINDQILRTLAELEFTHMTPVQAACIPLFVGNKDVAAEAVTGSGK
TLAFVIPLLEILLRREEKLKKMQVGALIITPTRELALQISEVVERFIQSFPQFRQILLIG
GSNPIEDVEKFRTFGANIVIGTPGRLEDMFRRKADGLDLASCVKSLDVLVLDEADRLLDM
GFEASLNTILGFLPKQRRTGLFSATQTQELEKLVRAGLRNPVRITVKEKGVAATSVQKTP
ARLSNFYMVCRADEKFNTLVAFLRQHKHEKQLVFFSTCACVEYYGRALELLVKNVPVHCI
HGKMKHKRNKIFSEFRKLKSGILVCTDVMARGIDIPEVNWVLQYDPPSSASAFVHRCGRT
ARIGNQGSALVFLLPMEESYVNFLSINQKCPLQQMPLVKDVVDVLPKLKAMALGDRAVFE
RGMRAFVSYVQAYAKHECSLIFRVKDLDFGALARGFALLRMPRMPELRAKTFPDFVEEAV
DTDAIRYKDKNREKQRQKQLAEKKERKVETLPTRKNFQKNKAWSKQKSKKDRRKRMAAKR
KQDEGSDVDDEDMKELLNDTRLLKRLKKGKISEEDFEKQLTAGCTSRVGGRGASQQGSSS
GMEEEDEM
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgcgactgacggccgctgggaaactttaccggtgaagatcaacgaccaa
attctgcggacgctcgcggagctggagttcacgcacatgaccccggtccaggccgcctgc
attcccctgttcgtgggcaacaaagacgtggcggccgaagcggtgacgggcagcggcaag
acgctcgctttcgtcatccccctgctggagatcctgctgagacgggaggagaaactgaaa
aaaatgcaggtgggtgccttgatcatcacacccacacgtgagctggcccttcagatcagt
gaggtggtggagaggttcatacagagcttccctcagttcaggcagatacttctaattggg
gggagcaacccgattgaagatgtggagaagttcagaacgtttggggccaacatcgtgatc
gggacgccgggccgtctggaggacatgttccgcaggaaggctgacgggttggacctggca
agctgcgtgaagtcgttggacgtcctggttcttgatgaagccgaccgtcttctggacatg
ggctttgaagcaagcctgaacaccatcctgggcttcttgccgaagcaaagacgcacgggt
ctgttctcagccacgcagacccaggagctggagaagctggtgcgggccggcctgcggaac
cccgtgcgcatcaccgtaaaggagaagggggtggcggccaccagcgtccagaagacccct
gctagactcagcaacttttatatggtatgcagggcggatgagaagttcaacactctggtg
gccttccttaggcagcacaagcatgagaaacagctggtgttcttcagcacgtgcgcctgc
gtggagtactatggcagggccctggagctccttgtgaagaatgtcccagtccactgcatc
cacggcaagatgaagcacaagcgcaacaagatcttctccgagtttcgcaagttgaagagt
ggcatcctggtctgcacggacgtcatggctcgtggcatcgacatcccagaggtcaactgg
gtcttgcagtatgaccctcccagcagcgcaagcgcctttgtccaccggtgcggacgtacg
gcacggataggcaaccagggcagtgctctcgtcttcctgcttcccatggaggagtcttac
gtcaacttcctctccatcaaccagaaatgtcccttgcagcagatgcctctcgtgaaggat
gtggtggatgtgctgcccaagctgaaggccatggccctgggcgaccgtgccgtatttgag
aggggcatgcgggcctttgtctcctatgtccaggcctacgccaagcacgagtgcagcctc
atcttcagggttaaagacctggatttcggcgctctagcgcgtggctttgctctcctccga
atgcctcgaatgcccgagctgcgggccaaaaccttccccgacttcgtggaggaggctgtg
gacacggacgccatccgctacaaggataagaaccgcgagaagcagaggcagaagcagctg
gcggagaagaaggaacgtaaggtggagactctaccgaccaggaagaacttccagaagaac
aaggcctggtccaagcagaaatccaagaaggacagaaggaaacgcatggctgctaagcgt
aagcaggatgaggggtcggacgtggatgacgaggacatgaaggagctgctgaatgacacc
cggctgctgaaacggctcaagaaagggaaaatcagcgaggaggactttgagaagcagctg
actgcagggtgcacgtcccgggtggggggcaggggggcttcgcagcagggttccagctct
gggatggaggaagaggatgagatgtga
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