Chania multitudinisentens: Z042_23545
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Entry
Z042_23545 CDS
T02987
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfo
Chania multitudinisentens
Pathway
sfo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Z042_23545
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfo03400
]
Z042_23545
Enzymes [BR:
sfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Z042_23545
DNA repair and recombination proteins [BR:
sfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Z042_23545
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
HTH_53
RecG_dom3_C
DUF6007
Motif
Other DBs
NCBI-ProteinID:
AHG22252
UniProt:
W0LIS2
LinkDB
All DBs
Position
3944225..3947704
Genome browser
AA seq
1159 aa
AA seq
DB search
MSISDNSRRSASSSSRYSLPGRAGDQRQLGQLTGSACAVECAEIAERHHGPVMLIAPDMQ
NALRLRDEIQQFTDQQVTTLSDWETLPYDSFSPHQEIISARLSSLYHLPTMARGIIILPV
NTLMQRVCPHEFLHGHALVMEKGQRLSRDKLRAQLEQAGYHSVDQVMEHGEFATRGALLD
LYPMGSEEPYRIDFFDDEIDSLRTFDVDTQRTLSEVDVINLLPAHEFPTDKNAIELFRSQ
WREQFEVRRDAEHVYQQVSKGTWPAGIEYWQPLFFSQPLPSLFSYLPVNTLIVNTGNLEN
AAERFWLDINQRYESRRIDPMRPLIAPDALWLRVDALFAELKAWPRMALKTDDLPAKAGS
TNLGYQTLPDLAVQPQQKAPLDNLRRFIENFSGSVIFSVESEGRRETLQDLLGRIKLSTR
LIQHLDEAEAPGRYMMIGAAERGFLDSLRHRALICESDLLGERVSRRRQDNRRTINTDTL
IRNLAELRPGQPVVHLEHGVGRYVGLTTLEAGGIKAEYLILSYASEDKLYVPVSSLHLIS
RYAGGADENAPLHKLGGDAWSRARQKAAERVRDVAAELLDIYAQRAAKSGFAFKHNREQY
QLFCQTFPFETTPDQEQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENGK
QVAVLVPTTLLAQQHFDNFRDRFATWPIRIEMMSRFRSAKEQQQVLEEAAAGKVDIIIGT
HKLLQSDLRWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGM
RDLSIIATPPARRLAVKTFVREYDNLVIREAILREVLRGGQVYYLYNDVENIDKAAERLA
ELVPEARIAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADR
FGLAQLHQLRGRVGRSHHQAYAYLLTPNPKAMSTDAHKRLEAIAALEDLGAGFALATHDL
EIRGAGELLGEDQSGQMTSVGFSLYMELLESAVDALKNGREPSLEDLTSSQTEVELRMPT
LLPDDFIPDVNTRLSFYKRIASAKDAGELDELKVELIDRFGLLPDAARNLLQSAAMRQHA
QKLGIKRIEGNERGGFIEFGEKNCVDPSYLIGLLQSKPQVYRLDGSAKLKFILDLTDRPA
RLAFISELLSAFQEHMLAA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgagcatttctgataatagccgccgttccgcatcatcatcttcccgttattctctgccc
ggccgtgcaggcgatcagcgccaattggggcaactgaccggttctgcctgcgccgttgaa
tgtgccgaaatcgccgaacgtcatcatggcccggtgatgctcatcgccccggatatgcaa
aatgcgctgcggctgcgtgacgaaattcagcagtttaccgatcagcaggtaaccaccctt
tctgattgggaaactctaccctatgacagtttctcaccgcatcaggaaatcatctctgcg
cgcctttccagcctgtatcatctgccaaccatggctcgcggcattattattctgccggtg
aataccctgatgcagcgggtgtgcccgcatgaattcctgcatggccatgcgctggtgatg
gaaaagggtcagcgcctgtcgcgggataagctgcgggcccagttggaacaggccggctac
cacagtgtcgatcaggtgatggagcacggcgagttcgccacgcgcggagcattgctcgat
ctgtatccgatggggagcgaagaaccctaccgcattgacttttttgatgatgaaatcgac
agcctgcgcaccttcgacgtagatactcagcgtactttgagcgaagtggacgtcatcaat
ctgctacccgcgcatgaattccccaccgataaaaatgccattgagctgttccgcagccaa
tggcgcgagcaatttgaagtccgccgcgacgcagaacatgtttatcagcaagtgagcaaa
ggcacctggcctgcgggcatcgaatactggcaacccctgtttttcagccaaccactgcct
tcactgttcagctatttgccggtaaacacgctgatcgtcaacaccggcaacctggaaaac
gccgccgagcgcttctggctggatatcaaccagcgttacgaaagccgccgtatcgatcca
atgcgccccttgatcgcgcctgatgctctctggttgcgcgtcgatgctttatttgccgaa
ctgaaagcctggccgcgcatggcactgaaaaccgatgatttgcccgccaaagccgggagt
accaatctgggttatcaaaccttgcccgatctggctgtgcaacctcagcagaaagccccg
ctggataacctgcgtcggtttatcgaaaattttagcggcagtgtcattttctcggtagaa
agtgaaggccgccgtgaaaccctgcaagatttactggggcgcatcaaactgagcacccgc
ctgatccagcatcttgatgaggcagaagcaccaggccgttatatgatgatcggcgccgcc
gagcgcggttttctggatagcctgcgccaccgggcactgatttgtgaaagcgatttactc
ggtgaacgcgttagccgccgccggcaggataatcgccgcaccatcaataccgataccctg
atccgcaacctggcggagctgcgccccggccagccggtcgtgcatttggaacacggcgtc
gggcgctatgtcggcctgaccaccctggaggccggaggcatcaaggctgaatacctgatc
ctgtcttatgcgagcgaagataaactgtatgtaccggtttcctctttgcatctgatcagc
cgctacgccggtggagccgatgaaaatgccccgttgcacaaactggggggcgatgcctgg
tcgcgggcgcggcaaaaagcagccgaacgcgtgcgggacgtggccgcagagctgctggat
atttatgcccaacgcgccgccaagtccggctttgcgttcaaacataaccgagaacaatat
cagctattctgccaaaccttcccgtttgaaacgacgccggatcaggaacaggccatcaac
gccgtgttgagtgatatgtgtcaaccgctggcgatggatcgcttggtttgtggcgatgtc
ggcttcggtaaaaccgaagttgcgatgcgtgctgcatttttagccgtggaaaacggcaag
caggtagcggttctggtgccgacgaccctgttggcacagcagcatttcgacaacttccgc
gatcgttttgctacctggcctatccgtattgagatgatgtcgcgctttcgcagtgccaaa
gagcaacagcaggtgctggaagaggccgcagcaggcaaagtggatatcattattggcacc
cataaattactgcaaagcgatttgcgctggaaagatttaggattactgatcgtcgatgaa
gaacaccgtttcggtgtgcgccataaagaacgcattaaagcgatgcgcgccgacgttgat
atcctgacgctgaccgccacgccgatcccacgtaccctgaatatggcgatgagcggcatg
cgcgatctttcgattatcgccaccccgcccgcccgccggttagcggtaaaaacctttgtg
cgtgaatacgataacctggtgatacgcgaagccatcttgcgtgaggtgctgcgcggtggg
caagtctattacctgtacaacgatgtggaaaatatcgataaggctgcggaacgcttggca
gaattggtgccagaagcacgcatcgccattggtcatggccaaatgcgcgagcgcgatctg
gaacgggtgatgaacgatttccatcaccagcgttttaacgtgctggtctgcaccaccatt
atcgaaaccggtattgatattccaagcgccaataccattatcattgagcgggccgatcgt
ttcggtttagcgcagttgcaccaattgcgtggccgcgtcgggcgttcacaccaccaggct
tatgcctacttgcttacgccaaaccctaaagcaatgagcaccgacgcacataaacgcctg
gaggccattgctgcgctggaggatttgggtgcaggctttgcgctggctactcacgatctg
gaaatccgtggcgctggagaattgttgggggaagatcaaagtggccagatgaccagcgtt
ggtttctcgctgtatatggaactgctggaaagtgcggtcgatgcgctgaaaaatggccgt
gagccttcgctggaagatctcaccagcagtcagaccgaagttgaactgcgcatgcccacg
ttgctaccggatgatttcatcccagacgtcaatacccgtttatccttctataaacgcatc
gccagtgcgaaagacgctggtgaactggacgaattgaaagtggagctgatcgaccgcttt
gggttattgccagatgctgcgcgcaatttgctgcaaagtgcggcgatgcggcaacatgcg
cagaaactgggtatcaagcgtatcgaaggcaacgaacgcggtgggtttatcgaattcggc
gagaaaaactgcgttgacccaagctacctgatcggcctgctgcaaagcaaaccgcaggtt
tatcgcttggatggctcggccaaactgaaatttatactggatctcaccgatcgcccggca
cggctggcgtttattagcgagctgttgagcgcattccaagaacatatgctggcggcctga
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