Shewanella frigidimarina: Sfri_2399
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Entry
Sfri_2399 CDS
T00395
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfr
Shewanella frigidimarina
Pathway
sfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sfri_2399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfr03400
]
Sfri_2399
Enzymes [BR:
sfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sfri_2399
DNA repair and recombination proteins [BR:
sfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sfri_2399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABI72244
UniProt:
Q080S1
LinkDB
All DBs
Position
2860423..2863959
Genome browser
AA seq
1178 aa
AA seq
DB search
MNLFSVLTPPSVKKGQQTQTLATLGGVSQAITLANLINNHAGTSIIVTHDTPSALSLEVE
LSYLLNHINVNVCLFPDRETLPYDSFSPHQDLISQRLETLANIGQSQHNVVIVPVNTLMV
RLPPKSFMTANVMVLNKGDTYSLQQARQHLTDTGYHIVDQVYEHGEFAIRGSIIDIFPTG
SKQPLRIELFDDEVESIRFFDVDTQRSGMARDAIRMLPAKEFPTDNHAIEGFRQRYRRRF
EVISKEAESVYQLVSRNLMPAGIENYLPLFFDDTATLFDYLPQNSQLITLGNIEKASLAH
LHEVNVRYEDRRVDPLRPLLAPKELYLLNDELFAAFKSFTRTQLLQQYIATDTNNAGEPL
AEVELPTHTLIANVETLPDINANHKLKQPLIALQEYCQQHPKLVFSAESEGRREALLDLF
AKIDIKPKQFAHLNDYLAAKDNIGLIVSPLARGCVLTDTAKGAVSIICETELFGQRISQQ
RRREKQKQVSTDVLVKNLAELKVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLEYSGG
DKLYVPVSSLHLISRYNASGDGNTHLNKLGNETWAKAKKKAIERIRDVAAELLDVYARRQ
ARPGDAMSIDEEEYAQFSQGFPFEETVDQESAIHAVLEDMQAPRAMDRLVCGDVGFGKTE
VAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPIVIEVMSRFRTAKEQSSVV
EQLSEGKVDIVIGTHKLLSSEANFDNLGLLVIDEEHRFGVRQKEKIKALRANVDILTLTA
TPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDKATAREAILREILRGGQVYYLH
NNVETIEKTAQNIRDLLPEARVITAHGQMRERDLEKVMSDFYHQRFNVLVCTTIIETGID
VPSANTIIIDRADMFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKRMTPDARKRLAAIEAL
EDLGAGFLLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKEGKEPSLAY
MMSAKAEIDLRIPALLPEDYVSDVNMRLSLYKRIANCETDTMLDELKVEFIDRFGMLPVP
TRNLMAITLYKHQATALGIHKIEMHAKGGSVEFGQENHVDPMFIIGLLQNQPQIYRMDGP
NKLKFNIPAETSKERLELINTLLGQFAKHQILETNSAS
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgaacctatttagtgtactcacgccgccgagtgtaaaaaaaggccaacaaacgcaaact
ttggcaacattgggtggcgtgtcgcaagccatcaccctcgccaatttaatcaataaccat
gctggcaccagtattattgtcactcacgatacgcctagtgcgttatcgcttgaggtcgaa
ctgagttatttattaaaccacatcaatgtgaatgtgtgtttgttccccgatcgtgaaacc
ttgccttacgatagcttttcgccacaccaagacttgatatcacagcgacttgaaacctta
gctaatattggtcaaagccagcacaatgtggtcatagtaccagtaaataccttaatggtt
cgcctaccaccgaagtcgtttatgaccgccaatgttatggtgcttaataaaggcgacaca
tacagtttacagcaagccaggcaacaccttactgataccggttaccatatcgtcgatcaa
gtatatgaacatggtgagtttgctattcgtggctctattatcgatattttccctactggc
tcaaaacaaccattacgcatagagttgtttgacgatgaagtcgaatcgatacgctttttt
gatgttgatacccagcgttcaggcatggctcgcgatgcgattcgcatgttgccagccaaa
gaattcccaaccgacaaccatgctattgaaggttttagacaacgttatcgtcgtcgcttt
gaagtaatttcaaaagaagccgagtcagtttatcaactcgttagccgtaatttaatgccc
gcaggcatcgaaaactacttaccgttatttttcgatgatacggcaacattgtttgattat
ttaccgcaaaacagtcaactcatcaccttaggcaatattgaaaaagccagcttagcgcac
ttacatgaagtaaacgttcgctacgaagaccgacgagttgatccactaaggccgttattg
gcgccaaaagaactttacttgcttaatgatgaattattcgcggcatttaaatcttttact
cgtacccaattattacagcaatatattgccaccgacaccaataatgccggcgagccgcta
gctgaagttgaacttccaacgcataccctcatcgctaacgttgaaacactgccagacatc
aatgctaaccataaactcaaacaaccactcattgcgttacaagagtattgtcagcagcat
ccaaaattagtgtttagtgccgaatcggaaggccgccgtgaagccctgttagacttattt
gccaaaattgacattaaacccaagcagtttgctcatcttaacgactatctagcagccaaa
gacaatatcggtttaatcgtgtcacctttggcgcgaggttgtgtgctaaccgacaccgca
aaaggtgccgtgagcatcatttgtgaaaccgaactgtttggtcagcgtatttcgcagcaa
cgtcgccgcgaaaagcaaaagcaagttagcaccgatgttttagttaaaaacctagctgaa
cttaaagtcggtcaacctattgtccacttagagcacggtgttgcgttataccaaggatta
gaaacgctcgatactggcggtttggttgcagaatacttaaaactggaatattcaggtggt
gacaagttgtatgtgccagtgtcgtcactgcatcttatcagtcgctacaatgccagcggc
gatggtaatactcacctcaataagttaggtaacgaaacctgggctaaggccaagaaaaaa
gccatcgaacgtattcgtgatgtggccgctgaattgttggatgtctatgcccgtcgtcaa
gctcgccctggcgatgcgatgagtattgatgaagaagaatacgcccaattcagtcaaggt
ttcccctttgaagaaaccgtcgaccaagaaagtgccattcacgcagtacttgaagacatg
caagcaccacgcgcaatggatcgtttagtctgtggtgacgtgggttttggcaaaacagaa
gtggctatgcgagcagcatttgttgctgtgaatgccggtaaacaagtggtggtgttagta
ccgactaccctacttgcccagcaacactacgaaaactttaaagaccgttttgctgattgg
cctatcgttattgaagtgatgtcacgctttagaaccgctaaagagcaaagcagtgttgtc
gaacaactgtctgaaggtaaagtcgatatcgttatcggtacccataagttactgtcttca
gaagctaacttcgataacctcgggttattagtcatcgacgaagaacaccgctttggtgtg
cgtcaaaaagaaaaaattaaagcattacgtgccaatgtcgacattttaaccctcaccgcc
acaccgattccgcggacattgaacatggctatgtcaggtatgcgagatttatcgattatc
gctacccctccagctaaacgtttggcagtaaaaacctttgtgcgtgaatatgacaaagcc
acggcacgagaagccatcttgcgtgaaattttgcgtggtggccaagtgtattatctgcat
aataatgttgagaccattgaaaaaacggcgcaaaacattcgcgatttactgccagaagcc
cgcgtcataaccgcccatgggcaaatgcgtgaacgcgatcttgaaaaagtcatgtcagac
ttttatcaccaacgttttaacgtgttggtatgtactaccattatcgaaaccggtatcgat
gtgcctagtgccaataccatcattatcgaccgagccgatatgtttggtttagcacaattg
caccagcttcgcggccgtgttggccgatcgcatcatcaagcctatgcttatatgatgacg
ccacatcctaaacgtatgaccccagatgcccgcaaacgtcttgcagccattgaagcccta
gaagatcttggcgcaggttttttactcgccacccaagatttagaaattcgcggtgcgggt
gaattgcttggcgacgaacaaagtggccatatctcaaaaattggttttagcttatacatg
gaaatgctggaatctgccgtaaaagccctcaaagaaggaaaagagccttctttagcctat
atgatgagtgccaaagcagaaattgatttacgcattccggcattattaccagaagattac
gtcagtgatgttaatatgcgcttatcattgtataaacgaatcgctaactgcgaaaccgac
accatgctcgatgaacttaaagtcgaatttattgaccgatttggtatgttacctgtgcca
acccgtaatttgatggcgattactctgtataaacatcaagcaaccgcgttaggtattcat
aaaattgaaatgcatgccaagggtggcagtgtcgaatttggtcaagaaaatcacgtcgat
ccgatgtttattattggtttgttgcaaaaccaaccacaaatctatcgaatggacgggcca
aataagttaaagttcaacattcctgctgagacaagcaaagagcgtcttgagttaatcaac
accctgcttggacagttcgctaaacatcaaattttggagacaaatagtgcttcgtaa
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