Syntrophobacter fumaroxidans: Sfum_3479
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Entry
Sfum_3479 CDS
T00418
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Sfum_3479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfu03400
]
Sfum_3479
Enzymes [BR:
sfu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Sfum_3479
DNA repair and recombination proteins [BR:
sfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Sfum_3479
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABK19150
UniProt:
A0LNZ8
LinkDB
All DBs
Position
4248742..4252311
Genome browser
AA seq
1189 aa
AA seq
DB search
MRDQRSYGPSETLFGAESFKTDSREILAFLGESRESAVLRGAQKPAVAYLLARGMATLKR
PFLLVTPTDREAESFAETIAFFAGNDLHRQDVPADRRVWCLPSRSGQKSQSLGKMATMAR
RMETLHAFRASIGSNVFVTSAVALMERLLLPEVLLAHSDYRVKGETVELETLCATLVERG
YYRVSLVEEYGDFSIRGGVLDVYAPLYRWPLRLEFFGDELESIRLFHPSTQRSMGILEDA
VLLPASEVILDVSARERAREAVYADVREGRLTPAAGNVWLDKLQEGHQFGAFESIMSVFY
EKTVTVWNYLDPATVVVWSDALQIRKIMEEFFLHASRDWNENHSPHEWRRPPSELLEIPE
RLIADGESFQQLIVNSLSGGTEPRAVFDMGTSGHEQLALSVRAHAEKERLLEPLARQFQR
WREEGILSFLVCRQKEQAGRLSELLEGHGTDTVLTLLPFGAESYEAPAVKVIVGSLDRGF
VWPAERLAVVAEEEIFGKRTRRRSGKSVSGLFLSSFQDLHIGDFVVHVDHGIGVYKELVH
LAVRGIESDFLLLEYQDGDRLYVPVDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKAL
ESAERVAEELLSLYAKRQIGEGFRFSPPDSYFQKFEATFSYEETPDQMRAIDDVLDDMAS
RRPMDRLICGDVGYGKTEVALRAAFKAVMDGKQVAMLVPTTVLAEQHYQSFTERFEGFPV
VVETLSRFKTPAQQTLVLKGLKNGTVDVVVGTHRLLQSDVAFRDLGLLVIDEEHRFGVKH
KERMKEMRVSVDVLTLTATPIPRTLHMALAGIRDLSTIETPPQDRHAIETFICKYDEFTI
REAVYRELRRSGQVFFVHNHVQSIYQTANAIGRLIPEAKIAVAHGQMKERDLEKVMLDFI
RRKIDVLVCTTIIESGLDIPAANTIIINRADKFGLAQIYQLRGRVGRSSEQAFAYLLIPG
EHLISRDAQKRLRALLDFSELGAGFKIALNDLQIRGGGTILGSSQSGHIAAVGYELYLEL
LEKTIKEMKGEERETESIDPEINVPLSAFLPETFIPDKDQRLIAYKRLATLAEPAAVDDL
AGEWRDRYGPFPEGARNLVMLAKMRLLFKRLGVVRLDRDKDFFSLHFAPRVSVDRVAAFL
GEKKCTFVVETDRRVKVEIWGRHLAQQVLRLKRILQELAERDSDIKSNR
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
gtgcgcgatcagagatcgtacgggccatctgagacgctttttggagcggaatcgttcaag
accgattccagggagatactggcctttctgggggaatcgcgggaatcggccgttctgaga
ggggctcagaaaccggcggtggcctatcttctcgccaggggaatggcgacgctcaagagg
ccgttcctgctggtcacccccacggaccgggaagcagaaagctttgccgagacaatagcc
ttctttgccgggaatgacttgcaccggcaggacgttcccgcggaccgaagagtctggtgc
ctcccttcgcgctccggccagaaatcccagtccctgggtaaaatggcgacgatggcgcgc
cgcatggaaacccttcatgccttccgcgcgtccatcgggtccaacgtgttcgtgacttcg
gcggtggccctgatggaacggctgctgctgcccgaggttctcctcgcgcattccgactat
cgggtcaagggggaaaccgtcgagctcgagacgctgtgcgcgacactagtggagcgtggt
tactatcgcgtgtcactcgtggaagaatacggcgatttcagcatccggggcggagtgttg
gacgtctacgcgccgctgtacaggtggccgctgcggctcgaattcttcggagacgagctt
gaatcgatccggctcttccatccgagcacgcagcggtccatggggattctggaagatgcc
gtcctgcttcccgcaagcgaagtcatcctggatgtttccgccagggaacgcgcccgggag
gccgtctacgcagacgtgcgggagggacgcctcacgccggcggccggtaatgtctggctg
gacaagcttcaggaaggacaccagttcggggcgtttgaatcgatcatgtccgtcttctac
gagaagacggtgaccgtgtggaattacctggacccggcgacggttgtggtctggtcggat
gccttgcagatcagaaagatcatggaggaattcttccttcatgccagccgggattggaac
gagaaccattcgccccatgaatggaggaggcctccgtcggagctgctggagattcccgag
cggttgatcgccgacggggagagttttcagcagttgatcgtcaattccctgtcgggcggg
accgagcctcgcgcggtttttgacatggggacgtcgggtcacgagcagcttgctttgagc
gtcagggcgcatgccgagaaagagcgattgctcgagcctctggccaggcagttccaacgg
tggagggaagagggcattttgtctttcctcgtctgccgtcagaaagagcaggcggggaga
ctgagcgaactgctcgaggggcacggcacggataccgttctcaccctgcttcctttcgga
gcggaatcgtatgaggcgccggccgtcaaggtgattgtgggctccctggaccgcgggttc
gtgtggcccgcggaacggctggccgtggtggcggaagaggagatcttcgggaaacgaacg
cgccgccggtccgggaagagcgtttccgggctctttctgagttcctttcaggatctgcac
atcggcgatttcgtggtgcatgtggatcatgggatcggagtctacaaggaactggtgcac
cttgccgttcggggaatcgaaagcgacttcctgctgctcgaataccaggatggcgaccgg
ctctatgttcccgtcgacaagctgcagaaggttcagaagtatctcgggctggaagggcag
cagcccaagatcgacaagctgggcggcaggtcctgggagacggccaaaaagaaggcgctg
gaatcggcggagcgtgtcgccgaggaactgctgagcctgtatgcaaagcgacagatcggc
gagggcttccggttctctccgccggacagctattttcagaagttcgaagcgactttctca
tacgaagagactccggatcagatgagggccatcgacgacgttctggatgacatggcatcc
aggcgtccgatggatcgcctgatctgcggggatgtgggttacgggaagacggaagtggct
ctgcgtgccgccttcaaggccgtgatggacggcaagcaggtggcgatgctggtgccgacc
acggtgttggccgagcagcattaccagagtttcaccgagcgattcgaaggctttccggtc
gttgtggaaactctgagccggttcaagaccccggcacagcagacgctggtcctgaagggg
ctaaagaacggcacggtcgacgtcgtggtgggcacccaccggttgctgcagtccgacgtt
gccttcagggacctgggcttgctggtcattgatgaagagcaccgtttcggtgtgaaacac
aaggagcggatgaaggaaatgcgggtatccgtggacgttctgacgctcacggcgaccccc
atcccccgtactctgcatatggccctggcgggcatccgtgacctgagcaccatagagacg
cccccccaggaccggcacgccatcgaaacgtttatctgcaagtacgacgagttcaccatt
cgggaggcggtgtatcgggagttgcggcgcagcgggcaggtcttcttcgttcacaaccac
gttcagagcatctaccagacggcaaatgccattggccggctgattcccgaagcgaagata
gcggttgcccacggacagatgaaagagcgggacctggaaaaggtgatgctggatttcatc
cgcagaaagatcgacgtcctggtttgcaccacaatcatcgagtcgggcctggacattccc
gcggcgaacaccatcatcatcaaccgcgccgacaagttcggccttgcccagatctaccag
ctgcggggacgagtggggcggtcgagcgaacaggccttcgcctacctgctcattcccgga
gaacatctcatcagtcgggatgctcagaaacggttgagggccctgctcgatttcagtgag
ctgggcgcgggattcaagatagccctcaacgatctgcagatccgcggaggcggaacgatc
ctgggttcctcccagtcggggcacattgccgcggtgggctatgagctctacctcgagctt
ctcgagaagacgatcaaggaaatgaagggagaagagcgcgaaacggagtccattgacccc
gagatcaacgtgcccctttcggcctttctgccggagaccttcattcccgacaaggaccag
aggctcattgcctacaagaggctcgccacgctggcggaaccggcggcggtggacgatctg
gccggcgaatggcgagaccgttacggaccctttccggagggtgccaggaacctggtcatg
ctggccaagatgcgcctgctcttcaaacgtctgggggtggtccgcctggacagggacaag
gattttttctccctgcattttgcgccgcgagtcagcgtcgatcgggttgcggcattcctt
ggggagaagaaatgcactttcgtggtcgaaacggaccgcagggtgaaggtggagatttgg
ggtcggcatttggctcagcaggttctgcgcctgaaaagaatcttgcaagagcttgccgaa
cgtgatagtgatatcaagtcaaatcgatag
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