Streptomyces fungicidicus: CNQ36_14215
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Entry
CNQ36_14215 CDS
T07133
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfug
Streptomyces fungicidicus
Pathway
sfug03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CNQ36_14215 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfug03400
]
CNQ36_14215 (mfd)
Enzymes [BR:
sfug01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CNQ36_14215 (mfd)
DNA repair and recombination proteins [BR:
sfug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CNQ36_14215 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AYL36482
UniProt:
A0A494UME9
LinkDB
All DBs
Position
complement(3183512..3187045)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDTALAEAIAAAADGNRMHIDLVGPPAARPFTVAALARDTGRPVLAVTA
TGREAEDLAAALRSLLPPEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLRTGGTADLGATVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRERARALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPEGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVDAASLWSLADVRDRARELDMM
WWSVSPFAADEELDSDTLKLGMHAPETYRGDTARALADTKGWLADGWRTVFVTEGHGPAA
RTVEVLGGEGIAARLDPDLGEITPSVVHVSCGCIDHGFVDPALGLAVLTETDLTGQKASG
REGARMPARRRKTIDPLTLEAGDHIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADSPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVVVKALSRFQSDTEAKA
VLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEQKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSESALEQVVVDFWEKKSDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGG
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELVDRYGKL
PEPVENLLLVAGLRMLARACGVGEVVLQGNNVRFAPVELRESQELRLKRLYPGTVIKPSV
HQVLVPRPKTAKVGGKPLVGRDLLGWTGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtagtcaaggacaccgccctcgcggaagcgatc
gcggcggccgcagacggcaaccgcatgcacatcgacctggtcgggccgcccgcggcccgg
cccttcacggtcgccgccctggcccgtgacaccggccgcccggtgctcgcggtgacggcg
accggacgcgaggcggaggacctggccgcggccctgcgctcgctgctcccgcccgagggc
gtcgtggagtacccgtcctgggagaccctcccgcacgagcggctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtgctgcgccgcctggcccacccgcgcccggacgacccc
gagaccggcccggtctccgtcgtcgtcgcccccgtgcgctccgtgctccagccgcaggtc
aagggcctgggcgacctggagccggtgtccctgcgcaccggcgggaccgccgacctgggc
gcgaccgtcgaagccctggccgccgccgcgtacgcacgtgtggagctcgtcgagaagcgc
ggcgagttcgccgtccggggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggtctgtgggccccgccgtgccgcgagctgctg
ctcaccgacgacgtacgggaacgcgcccgggccctcgccgaggaccacccggagctgggc
gaactgctgggcaaaatcgccgagggcatcgcggtcgagggcatggagtccctggccccg
gtcctcgtcgacgacatggagctgctgctggacgtgctgcccgagggcgccatggccgtg
gtctgcgaccccgagcgggtgcggacgcgcgcgtcggacctggtggccacctcgcaggag
ttcctgcaggcctcctgggcggccaccgcaggcggcggcgaggcgcccatcgacgtggac
gccgcctccctgtggtccctcgcggacgtccgcgaccgggcccgcgagctggacatgatg
tggtggtcggtgtccccgttcgccgccgacgaggaactcgactccgacaccctcaagctc
ggcatgcacgccccggagacctaccgcggcgacaccgccagggccctcgccgacaccaag
ggctggctcgccgacggctggcgcacggtgttcgtcaccgagggacacggcccggccgcc
cgcacggtcgaggtgctcggcggcgagggcatcgccgcccgtctcgacccggacctcggc
gagatcaccccgtccgtggtgcacgtctcctgcggctgcatcgaccacggcttcgtcgac
cctgcgctcggcctcgccgtgctcaccgagaccgacctgaccggccagaaggcctccggc
cgcgagggcgcccggatgccggcccggcgccgcaagaccatcgacccgctcaccctggag
gcgggcgaccacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaagcgc
ggccagcccggcgaccggctgtacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcgcccaccctgcaccggctcggcggcgccgactggaccaagaccaag
gcacgcgccaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtacagcgcc
cgcatggccgcccccggccacgccttcggcgccgactcgccctggcagcgcgagctggag
gacgccttcccgtacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtcccgatggaccggctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtccgggccgccttcaaggccgtgcaggacggcaagcaggtcgccgtg
ctcgttcccaccacgctgctggtgcagcagcacttcgggacgttcagcgagcggtacgcg
cagttccccgtggtggtgaaggcgctgtcccgcttccagtccgacaccgaggccaaggcg
gtcctggagggcctgcgcgagggctcggtggacgtcgtcatcggcacccaccgcctgttc
tcctcggagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgagcacaaggagcagctgaagaagctgcgcgccaacgtcgacgtgctgaccatg
tccgccacgccgatcccgcgcaccctggagatggccgtcaccggcatccgggagatgtcg
acgatcaccacgccgccggaggagcgccacccggtgctcacgttcgtcggcccctacgag
cagaagcagatcggtgccgccatccgccgtgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtcgatcgaccgcgcggcggcccggctgcgcgagatcgtgccg
gaggcgcggatcgccaccgcgcacggccagatgtcggagtcggcgctggagcaggtcgtc
gtcgacttctgggagaagaagtccgacgtgctggtgtcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtcgagcgcggcgacaacttcggcctcagc
cagctgcaccagctgcgcggccgggtgggacgcggccgggagcgcgggtacgcctacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcggctcgcgaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggaaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtgcggatggtgggcgaggcggtcgcggactaccgcaggcagctggagacgggcggg
atcgaggaggagccgccgctcgaggtgaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgcgcctccaggcgtaccgggcgatcgcctccgcg
aactcggaggaggacatcaaggcggtgcgggaggaactcgtcgaccgctacggcaagttg
ccggagccggtggagaacctgctgctggtggcggggctgcggatgctcgcccgggcgtgc
ggtgtgggcgaggtcgtgctccagggcaacaacgtccgcttcgctcctgtggagttgcgc
gagtcgcaggagctgcgactcaagcgcctgtacccgggcacggtgatcaagccgtccgtc
caccaggtgctggtgccgcgtccgaagaccgcgaaggtgggcggcaagccgctggtcggg
cgggacctgctgggctggaccggggagttcctgacgtcggtcctgggatcctga
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