Shigella flexneri 8401 (serotype 5b): SFV_1811
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Entry
SFV_1811 CDS
T00377
Symbol
ydbK
Name
(GenBank) putative oxidoreductase, Fe-S subunit
KO
K03737
pyruvate-ferredoxin/flavodoxin oxidoreductase [EC:
1.2.7.1
1.2.7.-]
Organism
sfv
Shigella flexneri 8401 (serotype 5b)
Pathway
sfv00010
Glycolysis / Gluconeogenesis
sfv00020
Citrate cycle (TCA cycle)
sfv00620
Pyruvate metabolism
sfv00650
Butanoate metabolism
sfv01100
Metabolic pathways
sfv01110
Biosynthesis of secondary metabolites
sfv01120
Microbial metabolism in diverse environments
sfv01200
Carbon metabolism
sfv01210
2-Oxocarboxylic acid metabolism
Module
sfv_M00307
Pyruvate oxidation, pyruvate => acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
sfv00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00010 Glycolysis / Gluconeogenesis
SFV_1811 (ydbK)
00020 Citrate cycle (TCA cycle)
SFV_1811 (ydbK)
00620 Pyruvate metabolism
SFV_1811 (ydbK)
00650 Butanoate metabolism
SFV_1811 (ydbK)
Enzymes [BR:
sfv01000
]
1. Oxidoreductases
1.2 Acting on the aldehyde or oxo group of donors
1.2.7 With an iron-sulfur protein as acceptor
1.2.7.1 pyruvate synthase
SFV_1811 (ydbK)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
POR_N
POR
EKR
PFOR_II
Fer4_7
Fer4_16
Fer4_21
Fer4
Fer4_9
Fer4_10
Fer4_8
Fer4_2
Fer4_6
Fer4_17
Fer4_4
Fer4_18
Transketolase_C
Fer4_15
FlgM
Fer4_13
Motif
Other DBs
NCBI-ProteinID:
ABF03972
UniProt:
Q0T3Z3
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All DBs
Position
1855483..1859007
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AA seq
1174 aa
AA seq
DB search
MITIDGNGAVASVTFRISEVIAIYPITPSSTMAEQADAWAGNGLKNVWGDTPRVVEMQSE
AGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTPFVLHVAARTVATHALSIF
GDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSRVPFIHFFDGFRTSHEINKIV
PLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANPDTYFQSREATNPWYNAVYDHVE
QAMNDFAAATGRQYQPFEYYGHPQAERVIILMGSAIGTCEEVVDELLTRGEKVGVLKVRL
YRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAEPLYLDVMTALAEAFNNGERETLPRVI
GGRYGLSSKEFGPDCVLAVFAELNAAKPKARFTVGIYDDVTNLSLPLPENTLPNSAKLEA
LFYGLGSDGSVSATKNNIKIIGNSTPWYAQGYFVYDSKKAGGLTVSHLRVSEQPIRSAYL
ISQADFVGCHQLQFIDKYQMAERLKPSGIFLLNTPYSADEVWSRLPQEVQAVLNQKKARF
YVINAAKIARECGLAARINTVMQMAFFHLTQILPGDSALAELQGAIAKSYSSKGQDLVER
NWQVLALARESVEEVPLQPVNPHSANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALP
PDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPAS
LHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRQEHVEEE
KINYDFFLNLPEIDRSKLERIDIRTSQLITPLFEYSGACPGCGETPYIKLLTQLYGDRML
IANATGCSSIYGGNLPSTPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRL
LDQFADKIPAELLTALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLI
GGDGWAYDIGFGGLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRK
ARKDLGVSMMMYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLAL
SHDQMRQLTATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQP
EVAEQLWKDAAADLQKRYDFLAQMAGKAEKSNTD
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgattactattgacggtaatggcgcggttgcttcggtgacgtttcgcatcagtgaagtt
atcgccatctaccctattacccccagttccacgatggcagaacaggctgatgcctgggcc
ggaaacggcttgaagaacgtttggggagacacaccacgcgtggttgaaatgcagtcggaa
gcgggtgctatcgctaccgtgcatggcgctttgcagacgggtgccctttcaacatcgttt
acgtcatcgcagggtttgctgctgatgatcccgacgctgtacaaactggcaggcgaactg
acgccatttgtcctgcatgtagcggcacgtaccgttgccacacatgcactttctattttt
ggcgatcattccgacgttatggcggtgcgccagacgggttgcgcgatgttgtgtgcggct
aacgtccaggaagcgcaagactttgctctcatttcgcacatcgcaacgctgaagagccgc
gtgccatttattcatttctttgatggttttcgcacgtcccacgaaatcaataaaattgtc
ccgctggccgatgacactattcttgatctcatgccgcaggccgaaattgatgctcatcgc
gcccgggcgctcaacccggaacatccggtgatccgcggtacgtccgccaatcctgacact
tatttccagtctcgcgaagccaccaacccctggtacaacgcggtctatgaccatgttgaa
caggcgatgaatgatttcgctgccgcgacaggtcgtcagtatcagccgtttgagtattac
gggcatccgcaagcggaacgggtgattatcctgatgggctctgccattggcacctgtgaa
gaagtggttgatgaattgctaacccgtggcgaaaaagttggcgtgctgaaagttcgtctg
taccgtcccttctccgccaaacacttgctgcaagctctgccgggatccgtacgcagcgtg
gcggtactggacagaaccaaagaacccggtgcccaggcagaaccgctctatctggatgtg
atgaccgcactggcagaagcctttaataatggtgagcgcgaaaccctgccccgtgtcatt
ggtgggcgctatggtctttcatccaaagaatttggcccggactgtgtactggcggtattt
gccgagctcaacgcggctaaacctaaagcacgctttacggttggtatttacgatgatgtg
accaatctgtcactgccgttgccggaaaacactctgccaaactcggcgaaacttgaagcc
ttgttttatggccttggtagtgatggcagcgtttccgcaaccaaaaacaatatcaagatt
atcggtaattccacgccgtggtacgcacagggctattttgtttacgactccaaaaaagcg
ggcggcctgacggtttctcaccttcgcgtgagcgaacagccgattcgttccgcttatctc
atttcccaggctgattttgttggctgccaccagttgcagtttatcgataaatatcagatg
gctgagcgtttaaaacctagcggcattttcctgcttaatacgccgtacagcgcagatgaa
gtgtggtcgcgcttgccgcaggaagttcaggccgtgttaaaccagaaaaaagcgcgcttc
tatgtgattaacgcggcgaaaatcgcccgcgaatgtggcctggcggcccgtattaatacc
gtcatgcagatggcttttttccatctgacgcaaattctgcctggcgatagcgccctcgca
gaattgcagggtgcgattgccaaaagttacagtagcaaaggtcaggatctggtggagcgc
aactggcaggttctggcgctggcgcgtgaatccgtagaagaagttccgttgcaaccggta
aatccgcacagcgccaatcgaccgccagtggtttccgatgccgcccctgatttcgtgaaa
accgtaaccgcggcgatgctcgccgggcttggtgatgccctccccgtttcggcgctgccg
ccagacggcacctggccgatgggcaccactcgctgggaaaaacgcaatatcgccgaagag
atccccatctggaaagaggaactctgtacccaatgtaaccactgcgtcgccgcttgccca
cactcagctattcgcgcaaaagtggtaccgcctgaagcgatggaaaacgcccctgccagc
ctgcattcgctagatgtgaaatcgcgtgatatgcgcgggcagaaatatgtcttgcaggtg
gcaccggaagattgcaccggttgtaacctgtgcgtcgaagtttgcccggcgaaagaccgt
cagaatccagagattaaagccatcaatatgatgtctcgccaggaacatgtcgaagaagag
aaaatcaattacgatttcttcctcaacctgccagaaatcgaccgtagcaaactggaacgt
attgatattcgtacatcgcagctgattacaccgctgtttgaatattcaggtgcttgcccc
ggttgtggcgagacgccgtatattaaattgctgactcagctctatggtgaccggatgttg
atcgctaacgccaccggctgttcttcaatttatggcggtaacctgccctctacaccgtat
accaccgatgccaacggtcgtgggccggcatgggcgaactctctatttgaagataatgcc
gaatttggccttggtttccgcctgacggtcgatcaacaccgtgtccgcgtgctgcgtctg
ctggatcaatttgccgataaaatcccggcggaattactgacggcgttgaaatcagacgct
acgccagaggttcgtcgagaacaggtcgcagctttacgccagcaactcaacgatgttgcc
gaagcacatgaactgctgcgtgacgcagatgcactggtggaaaaatcaatctggctgatt
ggtggcgacggctgggcttacgatatcggctttggcggtctggatcatgtattgagtttg
acggaaaacgtcaacattctggtgctggatacgcaatgctattccaacaccggtggtcag
gcgtcgaaagcgacaccgctgggtgcagtaactaagttcggcgagcacggcaaacgtaaa
gcgcgtaaagatcttggcgtcagtatgatgatgtacggtcatgtttatgtggcacagatt
tctctcggcgcgcagctgaaccagacggtgaaagcgattcaggaagcggaagcgtatccg
ggaccatcgctgatcattgcttatagcccgtgtgaagagcatggttacgatctggctctc
agccacgaccagatgcgccaactcactgctaccggcttctggccgctatatcgctttgat
ccgcgtcgtgccgatgaaggcaaactgccgctggcgctggattcacgcccgccgtcagaa
gcactggaagaaacgttacttcacgagcagcgtttccgtcgtctgaattcgcagcagcca
gaagtggcagaacagttatggaaagatgctgcagctgatttgcaaaaacgctatgacttc
ctagcacaaatggccggaaaagcggaaaaaagcaacaccgattaa
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