Streptomyces fagopyri: GFH48_23905
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Entry
GFH48_23905 CDS
T06986
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sfy
Streptomyces fagopyri
Pathway
sfy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GFH48_23905 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfy03400
]
GFH48_23905 (mfd)
Enzymes [BR:
sfy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GFH48_23905 (mfd)
DNA repair and recombination proteins [BR:
sfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GFH48_23905 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QFZ75901
UniProt:
A0A5Q0LGB5
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All DBs
Position
5460386..5463940
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AA seq
1184 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAVKAATGQVRMHVDLVGPPAARPFAVAALAREAGRTVLAVTA
TGREAEDLAAALRSLLPADTVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLGGVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRRRAARLAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVDAASLWSIADVRERARELDMM
WWSVSPFAADESFTESFGGGGDADTLKLGMHAPETYRGDTARALADTKGWLAEGWRTVYV
TEAHGPAARTVEVLGGEGIAARLETDLADIGPSVVHVSCGSIDYGFVDPALKLAVLTETD
LSGQKAAGKDGARMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLV
VEYAPAKRGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAA
DLIKLYSARMAAPGHAFGSDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLV
CGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFGERYSQFPVNVRALSRF
QTDTEAKAVLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLR
ANVDVLTMSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRREL
LREGQVFYIHNRVESIDRAAARLREIVPEARIATAHGQMSEQSLEQVVVDFWEKRFDVLV
STTIVESGIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETA
HERLATIAQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADY
RAQLEGGAEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANTEEDVKAVREEL
VDRYGKLPEPVENLLLVAGLRMLARACGVGEVVLQGNNIRFAPAELRESQELRLRRLYPG
TVIKPAAHQLLVPRPKTAKVGGKPLVGRELLGWTGEFLATVLGS
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacgccgctctcgcggaagcggtg
aaggccgcgaccggccaggtccggatgcacgtcgacctggtgggaccgcccgccgcccgc
cccttcgcggtggccgccctagcccgcgaggccggccggaccgtactggcggtcacggcg
acgggacgggaggccgaggacctggccgcggcgctgaggtcgctcctgcccgccgacacg
gtcgcggagtacccctcgtgggagacgcttccgcacgaacggctctcgccccgctccgac
acggtcggccgccgcctcgccgtcctgcggcgcctcgcccatccccgccccgacgacccc
gagaccggcccggtgtccgtcgtcgtcgcccccgtccgctccgtgctccagcctcaggtc
aagggcctcggtgacctggaaccggtcgcgctgcgcaccggccagagcgccgacctcggg
ggcgtcgtcgaggccctcgcggcagccgcctacgcccgcgtcgaactggtcgagaagcgc
ggcgagttcgcggtccgcggcggcatcctcgacgtcttcccgcccaccgaggagcatccg
ctccgggtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacgggctgtgggcaccgccgtgccgcgagctgctg
ctcaccgacgacgtacggcggcgggccgcccggctggccgaggagcaccccgagctgggc
gaactgctcggcaagatcgccgagggcatcgccgtggagggcatggagtccctggccccg
gtcctggtcgacgacatggagctgctgctcgacgtgctgcccaagggctccatggccgtc
gtgtgcgacccggagcgggtacggacccgggccgcggacctggtggcgacctcgcaggag
ttcctccaggcgtcctgggcggcgaccgccggcggcggcgaggcccccatcgacgtggac
gcggcctccctgtggtccatcgcggacgtccgggagcgcgcgcgcgagctggacatgatg
tggtggtcggtgtcgccgttcgcggccgacgagtcgttcaccgagagcttcggcggaggc
ggcgacgccgacaccctcaagctcggcatgcacgcccccgagacctaccggggcgacacc
gcccgcgccctcgccgacaccaagggctggctcgccgagggctggcgcacggtgtacgtc
accgaggcgcacggccccgccgcccgtaccgtcgaggtgctcggcggagagggcatcgcg
gcccgcctcgaaaccgacctggcggacatcgggccgtccgtcgtgcacgtctcctgcggc
tcgatcgactacggcttcgtcgacccggcgctcaagctcgccgtcctcaccgagaccgac
ctctccggccagaaggcggccggcaaggacggcgcgcgcatgccggcccgccgccgcaag
accatcgacccgctgaccctcgaagccggcgactacatcgtgcacgagcagcacggtgtc
ggccgctacatcgagatggtccagcggaccgtgcagggcgcgacccgcgagtacctggtc
gtggagtacgcgccggccaagcgcggccagcccggcgaccgcctctacatcccgaccgac
cagttggagcagatcaccaagtacgtcggcggcgaggcaccgaccctgcaccgtctcggc
ggcgccgactggacgaagaccaaggcccgcgccaagaaggcggtcaaggagatcgccgcg
gacctgatcaagctgtacagcgcgcgcatggcggccccgggacacgccttcggctccgac
acgccctggcagcgcgagctggaggacgccttcccgtacgcggagacccccgaccagctc
accaccatcgccgaggtcaaggaggacatggagaagacggtcccgatggaccgcctggtc
tgcggcgacgtgggatacggcaagacggagatcgccgtccgcgccgcgttcaaggccgtg
caggacggcaaacaggtcgccgtgctcgtaccgacgacgcttctcgtgcagcagcacttc
ggcaccttcggcgagcgctactcgcagttcccggtcaacgtccgggcgctgtcgcgcttc
cagacggacacggaggcgaaggcggtcctggaggggctgcgcgagggctccgtggacgtc
gtcatcggcacccaccgcctgttctcctcggagacgaagttcaaggacctgggcctggtc
atcgtcgacgaggagcagcgcttcggcgtcgagcacaaggagcagctgaagaaactgcgc
gccaacgtcgacgtcctgacgatgtccgcgaccccgatcccgcgcaccctggagatggcg
gtcacgggcatccgcgagatgtccacgatcaccaccccgccggaggagcggcacccggtg
ctgaccttcgtcggcccctacgaggagaagcagatcggcgccgccatccggcgtgaactg
ctccgcgagggccaggtgttctacatccacaaccgcgtcgagtccatcgaccgcgcggcg
gcccggctgcgcgagatcgtccccgaggcgcgcatcgccacggcccacgggcagatgtcg
gaacagtccctggagcaggtcgtcgtcgacttctgggagaagaggttcgacgtgctcgtc
tcgacgacgatcgtcgagtccggcatcgacatctccaacgccaacacgctgatcgtggag
cgcggcgacaacttcggcctctcccagctgcaccagctgcgcggccgggtcggacgaggc
cgggagcgcggctacgcgtacttcctctacccgccggagaagcccctcaccgagacggcg
cacgagcggctcgcgaccatcgcccagcacaccgagatgggcgcgggcatgtacgtggcg
atgaaggacctggagatccgcggcgccggaaacctgctcggcggcgagcagtccggccac
atcgcgggcgtcggcttcgacctgtacgtccgcatggtcggcgaggcggtcgccgactac
cgcgcacagctggagggcggtgcggaggaggagccgccgctggaggtcaagatcgagctg
ccggtcgacgcgcacgtcccgcacgactacgcgccgggcgagcggctgcgtctgcaggcc
taccgtgccatcgcctccgccaacacggaggaggacgtgaaggccgtacgggaggaactc
gtcgaccgctacggcaagttgcccgagccggtggagaacctcctgctggtcgcagggctg
cggatgctcgcgcgggcgtgcggggtcggcgaggtcgtgctccagggcaacaacatccgg
ttcgcacctgccgagctgcgggagtcgcaggaactgcgcctgcggcggctgtacccgggc
acggtcatcaagccggccgcccaccagcttctggtcccccgcccgaagacggcgaaggtg
ggcgggaagccgctggtcggacgggagctgctggggtggaccggggagttcctggcgaca
gtgctcgggtcgtag
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