Streptomyces globisporus: WQO_13425
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Entry
WQO_13425 CDS
T04209
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgb
Streptomyces globisporus
Pathway
sgb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
WQO_13425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgb03400
]
WQO_13425
Enzymes [BR:
sgb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
WQO_13425
DNA repair and recombination proteins [BR:
sgb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
WQO_13425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
4HBT_3
DUF3090
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALU94262
UniProt:
A0A0U3KN31
LinkDB
All DBs
Position
complement(3125730..3129263)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDVVVTDPALAEAVKAAGDGHRAHVDLVGPPGARPFALAALARQTGRTVLAVTA
TGREAEDLAAALRTLLPPDRVAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRADDP
ETGPVSVVVAPIRSVLQPQVKGLGDLEPVSLSGGQSADLGEVVDALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKIADQRSLEVAAHGLWAPPCRELL
LTDQVRERAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKDAMTI
VCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVGAASLWGIADVRDRARELGMM
WWTVSPFAADAADHDDDTLQLSMHAPEAYRGDTARALADTKGWLADGWRTVYVTEGQGLA
SRTVEVLSGEGIPARLDADLTEITPSLVHVSCGAIEQGFVDPALKLAVLTETDLTGQRTA
TKDLGRMPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPVNVRALSRFQSESESK
ATLEGLKDGAVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
EQEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASASSEDDIRAVREELTDRYGPL
PEPVENLLLVAGLRMLARACGVGEVVLQGSNIRFAPVELRESQELRLKRLHPKTVIKPAA
HQILVPRPTTGKIGGKPVIGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggatgtcgtcgttacggacccggcgctcgccgaggcggtg
aaggccgccggggacgggcaccgggcccatgtcgacctggtcggcccgcccggcgcgcgc
ccgttcgccctggccgcgctggcccggcagaccggccggaccgtgctggccgtcaccgcc
acgggccgcgaggccgaggacctggccgcggccctgcgcacgctgctgccgccggacagg
gtcgcggagtacccctcgtgggagaccctgccgcacgagcggctctcgccccgctcggac
accgtgggccgccgcctcgccgtgctgcgccgcctggcgcacccccgcgcggacgacccg
gagaccggcccggtctcggtcgtcgtcgccccgatccgctccgtgctccagccgcaggtc
aaggggctcggcgacctggagccggtgagcctttcgggcggacagagcgcggacctgggg
gaggtggtggacgcgctggcggccgccgcgtactcccgggtggaactggtcgagaagcgc
ggtgagttcgccgtacgcggcgggatcctggacgtcttcccgccgaccgaggagcacccc
ctccgggtggagttctggggcgacgaggtcgaggagatccgctacttcaagatcgccgac
cagcggtcgctggaggtcgccgcgcacgggctgtgggccccgccctgccgcgagctgctg
ctgaccgaccaggtccgcgagcgggccgccgcgctcgccgaggcccacccggagctgggc
gaactgctcggcaagatcgcggagggcatcgcggtcgagggcatggagtcgctggccccg
gtcctcgtcgacgacatggagctgctgctcgacgtcctgccgaaggacgcgatgacgatc
gtctgcgacccggagcgggtgcggacgcgggcggccgacctggtcgccaccagccaggag
ttcctccaggcgtcgtgggcggcgagcgcgggcggcggcgaggccccgatcgacgtgggc
gcggcctccctgtggggcatcgcggacgtccgggaccgggcccgcgagctgggcatgatg
tggtggacggtctcgccgttcgcggccgacgccgccgaccacgacgacgacaccctccag
ctctccatgcacgcccccgaggcgtaccggggcgacaccgcccgggcgctcgccgacacc
aagggctggctggccgacggctggcgcacggtgtacgtcacggagggccaggggctcgcc
tcccgtacggtcgaggtgctgagcggcgagggcatcccggcccgcctcgacgcggacctg
acggagatcaccccgtccctggtccacgtctcctgcggggcgatcgagcagggcttcgtc
gacccggcgctgaagctggcggtgctcaccgagaccgacctgaccggccagcgcacggcc
accaaggacctgggccggatgccggcccgccgcaggaagacgatcgacccgctgacgctg
gaggtcggcgactacatcgtccacgagcagcacggtgtcggccggtacgtggagatggtg
cagcgcacggtccagggcgcgacccgcgagtatctgctcgtcgagtacgccccggccaag
cggggccagcccggcgaccgcctctacatcccgaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggccccgacgctgcaccggctcggcggcgcggactggacgaagacg
aagcagcgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtacagc
gcgcgcatggcggcccccggccacgccttcggcgcggacaccccgtggcagcgggagctg
gaggacgccttcccgtacgcggagacgcccgaccagctctccacgatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgggcggcgttcaaggcggtccaggacggcaagcaggtggcg
gtcctggtccccacgacgctcctcgtccagcagcactacggcacgttcaccgagcggtac
tcccaattcccggtcaacgtccgcgccctgagccgcttccagtcggaatcagaatccaag
gcaaccctggaaggcctgaaggacggcgcggtcgacctggtcatcggcacgcaccgcctg
ttctcctccgagacgaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgg
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtcctcacg
atgtccgcgacgcccattccccgtacgctcgaaatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcgccacccggtcctcaccttcgtcggcccgtac
gaggagaagcagatcggcgcggcgatccgccgtgaactgctgcgcgaggggcaggtcttc
tacatccacaaccgggtcgagtccatcgaccgggcggccgcccgcctccgcgagatcgtc
cccgaggcgcgcatcgcgacagcacacggccagatgtccgaacaggccctggaacaggtg
gtggtggatttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctc
tcccaactccaccagctgcgcggccgggtgggccggggccgcgaccgtggctacgcctac
ttcctctacccgcccgagaagcccctgaccgagacggcccacgagcgcctggccacgatc
gcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgac
ctgtacgtccgcatggtcggcgaggccgtcgccgactaccgggcccagatggagggcggc
gagcaggaggagcccccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccg
cacgactacgcccccggcgagcgcctgcgcctccaggcgtaccgcgcgatcgcctcggcc
tcctcggaggacgacatccgcgcggtccgcgaggaactcaccgaccgctacggcccgttg
cccgaaccggtcgagaacctcctcctggtggcgggcctgcgcatgctggcccgcgcctgc
ggagtcggcgaggtcgtcctccagggctccaacatccgcttcgccccggtggaactgcgc
gagtcccaggaactgcgcctgaagcgcctgcaccccaagacggtcatcaagccggccgcc
caccagatcctggtcccgcgcccgacgacgggcaagatcggcggcaagccggtcatcggc
cgcgaactgctggcgtggacgggggagttcctgacgacgatcctggggtcgtag
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