Selenobaculum gbiensis: P3F81_03135
Help
Entry
P3F81_03135 CDS
T09332
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgbi
Selenobaculum gbiensis
Pathway
sgbi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgbi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P3F81_03135 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgbi03400
]
P3F81_03135 (mfd)
Enzymes [BR:
sgbi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P3F81_03135 (mfd)
DNA repair and recombination proteins [BR:
sgbi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P3F81_03135 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
WIW71321
UniProt:
A0A9Y2AJP4
LinkDB
All DBs
Position
668756..672049
Genome browser
AA seq
1097 aa
AA seq
DB search
MEKLFELVKRDKSIAKVVNCFAKDHAESLIYGLSGSQKSMVLASCFKENQRTTIILTNTK
ESIEALQADLSMLLPDTAVLELPALDMVTFSAAAKSMALAAKRMDVLGRLIRKEKIIVLA
SAAAAVQKGLSKQEFEKSSLSLFIGLLIERERVLKKLVELGYERVEQVDSIGQFSARGGI
VDIFPINRQLPIRMEFFGDEIDSLREFDLTTQRSLQNITNADVLPLMQTDNTGKPEMFLA
YLEEQVTVIFDEPSRIREQITSLVKENPELKKHMFNWHEIIALAKQHNVMYLSLLLQKTP
NAEPSEIISVLAKAATPYHKQMDLLVSELNGWLERKMKPILFMTSAQKVESMRASLNEQK
IPSIVFDGKSDFVDSAVYICLGTLNNGFELPQANLVVLTEKDIFGRQKKRALPRAAKGEK
ITYFRDINIGDYVVHVNHGIGKYIGVETIEVGGMNRDYLHIRYGGDDKLFVPTDQVHLLQ
KYIGSEGEVPRLHKMGGTEWTKAKAKAKACVVDMAKELIQLYAKRKTETGFAFEADTPWQ
REFEEAFPYQETPDQLAAIEEIKADMEKPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGK
QVAVLVPTTVLAQQHFKTFQNRFAGFGPVVDVVCRFRTAKEQKETLAKLETGQVDVLIGT
HRILNQEVRFKDLGLLIVDEEQRFGVAQKEKLKKWSHGIDVLTLSATPIPRTLHMSLVGA
RDMSIIETPPEERYPVQTYVVENNDTIIRDAIKRELKRGGQVYFVYNRVETIDKMSNYLA
NMLPDAKIQVGHGQMAEELLEQVMLDFYEGQDDILVATSIIENGLDVPNANTIIIYDADR
FGLSQLYQMRGRVGRSNHMAFAYFVYQADKVLTEVAEKRLQAIKEFAELGAGFKIAMRDL
EIRGAGNLLGAQQHGHIASVGFEMYCRLLEEAIQEEKTGEPVKGYEEPMIDLKIEAYLPG
DYIADAMHKIEIYQRIAAIRNKQHLEQLLDELIDRFGEPPEEVMNLLTVARIKNIARHLG
LKSIIQQPMQIEFIFSDVPNVEMENIIKLKALFAAFIKVVPGPPEIIRMRLTQNYAKNIL
KYVTKILITLAVTEKKK
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctgtttgagctagttaagcgagacaaatcaattgctaaagtggtaaattgc
tttgcaaaggatcatgcagaaagtttaatttatggattgtcaggctcgcagaaaagtatg
gttttagcaagttgctttaaagaaaaccaacgcacgacgattattttaacaaatacgaaa
gaatctatagaagctttgcaggctgatttatctatgttgcttcctgataccgcagtttta
gaattgccagcacttgatatggttactttttctgctgcagcaaagagcatggcactggca
gcaaaacgaatggatgttttagggcgactaattcgtaaggaaaagattattgtcttagca
agtgcagccgctgctgtacaaaaaggtttgtcaaaacaagaatttgaaaaatcaagttta
tcgctttttattggtttattaatagagcgagagagggtattaaaaaagcttgttgaacta
ggatacgaacgtgtggagcaagtagatagtattggtcaatttagtgcgcgaggcggcatt
gttgatatttttccgattaatcgtcaactgccgattcgtatggagttttttggtgatgag
atagattctttgcgagaatttgatttaacgacgcaacgttccttgcaaaacattacgaat
gctgatgttttgccattgatgcagacagataatacaggcaagccagaaatgtttctggca
tatttagaggagcaagtgacggttatatttgatgaaccatcacgtattcgggaacaaatt
acttctttagtgaaagaaaatcctgaattaaagaagcatatgtttaactggcatgaaatt
attgctttagcgaagcaacataatgtcatgtatttatctttattattacagaaaacacca
aatgcagagccaagcgaaattatcagtgtccttgcaaaagcagcaacaccgtatcataag
cagatggatttattggtaagtgagcttaatggctggcttgaacgcaagatgaaaccgatt
ttatttatgacaagtgcacagaaagtagaatctatgcgtgcttctttaaatgagcagaag
ataccatctatcgtatttgatgggaaatctgattttgttgattcggctgtgtatatctgt
ttaggaacgttaaataatggttttgaattgccacaagcaaatttagttgttcttacggaa
aaagatattttcggcaggcagaaaaaacgtgcgttgccacgcgcggcaaaaggagagaaa
ataacctatttccgtgacattaatattggtgattatgttgttcatgtaaatcatggaatc
ggcaaatatatcggtgtagaaacaattgaagttggcggaatgaatcgcgattatttgcat
atacgttatggcggcgatgataaattatttgtgccaacggatcaagtacatttgttgcaa
aaatatattggttcagaaggagaagtgccacgtctgcataaaatgggtggtacggagtgg
acaaaagccaaagctaaagcaaaagcttgcgttgtagatatggcaaaggaattaattcag
ctctatgcaaaacgaaaaacggagactggttttgcctttgaagctgatacgccatggcaa
agagagtttgaagaggcttttccctatcaagaaacgccggatcaattggcggcgattgaa
gagattaaagctgatatggaaaaacctcgaccaatggatcgattgctttgtggtgacgtt
ggttttggaaaaacggaagtggcaattcgggcggcgtttaaagcggtcatgagtggaaag
caagttgcggttttagtaccaactacagttctagcgcagcaacattttaagacttttcaa
aatcgctttgctggttttggtcctgtagttgatgttgtatgtagatttagaacggcgaaa
gagcaaaaagaaacgctggcgaaactggagactggtcaagtcgatgttttaatcggtacc
catcgaattttaaatcaagaagtaaggtttaaagatttggggttactcattgttgatgaa
gaacagagatttggtgttgctcaaaaagaaaaactgaaaaagtggagtcatggaatagat
gtgttaacgttgagtgcgactccaattcctagaacactccatatgtcacttgtcggggca
agggatatgagtatcattgaaacgccgccggaagaacgttacccagttcaaacgtatgtg
gttgagaataatgatacgattattcgcgatgcaatcaagcgagaactaaagcgtggtgga
caggtatattttgtttataaccgtgtggaaaccattgataagatgagtaattatcttgcg
aatatgcttcctgatgcaaaaattcaagttggacacggacaaatggcagaagaactattg
gagcaagttatgttagatttttatgaagggcaagatgatatcttagttgcaacgagtatt
atcgaaaatggacttgatgtcccgaatgcgaatacaattattatttacgatgcggatcgt
tttggtctttcgcagctttatcagatgcgcgggcgtgttggcagatcgaatcatatggca
tttgcatactttgtttatcaagcggataaagtattaaccgaagttgcagaaaaaagatta
caggcgattaaagagtttgctgaacttggggcagggtttaaaattgcgatgcgtgatttg
gaaatccgtggtgctgggaatctgcttggggcacaacaacatgggcatattgctagtgtt
ggttttgaaatgtattgtcgattattagaagaggcaattcaagaggagaaaacaggtgaa
ccggtgaaaggctatgaagagcctatgattgatttaaagatagaagcatatttaccgggg
gattatattgctgatgcgatgcataagatagaaatatatcagcgtattgcagcaattcga
aataaacagcatttagaacagttgttagatgaattgattgaccgatttggagaaccgcca
gaagaggtaatgaatttattgactgttgcgcgcataaaaaatattgcgcggcatttaggt
ttaaaatctattattcagcaaccgatgcagattgagtttatttttagcgatgtgccgaac
gtagagatggaaaatataataaaattaaaagctttatttgcagcatttataaaagttgtt
cctgggccgccagaaattattcgtatgcggctaacgcaaaattatgcaaaaaatattttg
aaatatgtgacgaaaatattgattactttagccgtaacagagaagaaaaagtaa
DBGET
integrated database retrieval system
