Streptomyces griseorubiginosus: DWG14_04950
Help
Entry
DWG14_04950 CDS
T06099
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sge
Streptomyces griseorubiginosus
Pathway
sge03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DWG14_04950 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sge03400
]
DWG14_04950 (mfd)
Enzymes [BR:
sge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DWG14_04950 (mfd)
DNA repair and recombination proteins [BR:
sge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DWG14_04950 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AYC40682
UniProt:
A0A385ZNL9
LinkDB
All DBs
Position
5560157..5563687
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAIAAAQDSNRMHVDLVGPPAARPFAIAALAREAGRPVLAVTA
TGREAEDLAAALRSLLPSEGIVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRTGQSADLNTVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEQHPELGELLGRIAEGIAVEGMESLAPVLVDDMELLIDVLPKGAMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADLELEADTLKLGMHAPETYRGDTAKALADTKGWLADGWRAVFVTEAHGPAA
RTVEVLGGEGIAARLDHELASLSPSVVHVACGSIEYGFVDPSLKLAVLTETDLTGQKAAG
KDGARMPARRRKSIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVVVKALSRFQTDTEAKA
VLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEERQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASVNTEEDIKAVREELVDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRLKRLYPGTVIKPAVH
QVLVPRPKTAKVGGKPLVGRELLGWVGEFLTSILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggaccccgccctcgcggaagcgatc
gcggccgcccaggacagcaaccgcatgcacgtcgacctggtcggccccccggcggcccgg
cccttcgccatcgccgccctcgcgcgtgaggccggccggcccgtgctcgcggtgacggcg
acgggccgcgaggccgaggacctggccgccgccctgcgctccctgctgccgtccgagggg
atcgtggagtacccgtcctgggagaccctgccccacgagcggctcagcccccgcagcgac
accgtcggccgccgcctggccgtcctgcggcggctggcgcacccgcgtcccgacgacccc
gagaccggcccggtctccgtggtcgtcgcgcccgtgcgatccgtgctccagccgcaggtc
aagggcctcggcgacctggaaccggtcgccctgcgcaccggccagagcgccgacctgaac
accgtcgtggaggccctcgcggcggccgcgtacgcgcgcgtggagctcgtcgagaagcgc
ggcgagttcgccgtccgcggcggcatcctcgacgtcttcccgcccaccgaggaacacccc
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaagtcgccgagcacggcctgtgggccccgccctgccgcgaactcctg
ctcaccgacgacgtccgcgcacgcgcgcgtgccctcgccgagcagcaccccgagctcggc
gaactgctgggcaggatcgccgagggcatcgcggtcgagggcatggagtccctcgccccc
gtcctcgtcgacgacatggagctcctgatcgacgtcctgcccaagggcgccatggccgtc
gtctgcgatccggagcgggtgcgcacgcgtgcgtccgatctcgtggccacctcgcaggag
ttcctccaggcctcctgggcggccaccgcgggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgggaccgcgcgcgcgagctggacatgatg
tggtggtccgtgtcgccgttcgcggcggacctcgaactggaggcggacaccctcaagctg
ggcatgcacgcccccgagacctaccgcggcgacaccgccaaggcactcgccgacaccaag
ggctggctcgccgacggctggcgcgcggtcttcgtgaccgaggcccacggccccgcggcc
cgtaccgtcgaggtgctgggcggcgagggcatcgcggcccgactcgaccatgagctcgcc
tccctgagcccgtccgtcgtgcacgtggcgtgcggctcgatcgagtacggcttcgtggac
ccgtccctgaagctcgccgtgctcaccgagaccgacctgaccggccagaaggcggccggc
aaggacggcgcccggatgcccgcgcggcgccgcaagagcatcgacccgctcaccctggag
accggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtccag
cggaccgtgcagggcgccacgcgcgagtacctcgtcgtcgagtacgcccccgccaagcgc
ggccagcccggcgaccggctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggtgaggcgcccaccctgcaccggctcggcggagccgactggacgaagaccaag
gcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctcatcaagctgtacagcgcg
cggatggcggcaccggggcacaccttcggcccggacaccccgtggcagcgcgagctggag
gacgccttcccgtacgcggagacgccggaccagctcaccaccatcgccgaggtcaaggag
gacatggagaagtcggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtcagggccgcgttcaaggccgtgcaggacggcaagcaggtcgcggtc
ctcgtccccacgaccctgctggtgcagcagcacttcgggacgttctccgagcgctactcc
cagttcccggtggtcgtgaaggcgctcagccgcttccagaccgacaccgaggcgaaggcc
gtcctggaggggctgcgggagggctcggtggacgtcgtcatcggcacccaccggctgttc
tcctccgagaccaagttcaaggacctcggtctggtcatcgtcgacgaggaacagcgcttc
ggtgtcgagcacaaggagcagctcaagaagctccgcgccaacgtcgacgtgctgaccatg
tcggccaccccgatcccgcgcaccctggagatggcggtcacgggcatccgcgagatgtcg
acgatcaccacgcccccggaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagcggcagatcggcgcggccatccgccgtgaactgcttcgcgagggccaggtcttctac
atccacaaccgggtcgagtcgatcgaccgggcggccgcgcgactgcgcgagatcgtgccc
gaggcgcgcatcgccacggcccacggccagatgtcggagcaggccctggagcaggtcgtc
gtcgacttctgggagaagaagttcgacgtcctcgtgtcgaccacgatcgtcgagtccggc
atcgacatctccaacgcgaacacgctcatcgtcgagcgcggcgacaacttcggcctctcc
cagctgcaccagctgcgcggccgggtcggccgtggccgcgagcgcggatacgcctacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgaacgcctggcgacgatcgcc
cagcacaccgagatgggcgcgggcatgtacgtcgccatgaaggacctggagatccgcggc
gccggaaacctcctcggtggcgagcagtccgggcacatcgcgggtgtcggcttcgacctg
tacgtccgcatggtcggcgaggccgtcgcggactaccgggcttccctggaaggcggagtc
gaggaggagccgccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccgcac
gactacgcgccgggcgagcggctgcgtctccaggcctaccgcgcgatcgcctcggtcaac
accgaggaggacatcaaggccgtacgcgaggaactcgtcgaccgctacggcaagttgccc
gagccggtggagaacctgctgctggtggcgggcctgcgcatgctggcacgcgcgtgcggc
gtcggcgagatcgtcctccagggcaccaacatccgcttcgcaccggtggagttgcgggag
tcgcaggaactgcgcctcaagcggctgtacccgggcaccgtcatcaagccggccgtgcac
caggtgctggtaccgcgcccgaagacggcgaaggtcggcggcaagccgctggtcgggcgc
gaactgctgggctgggtgggggagttcctgacgtcgatcctggggtcgtga
DBGET
integrated database retrieval system
