Stenotrophomonas geniculata: RKE57_06420
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Entry
RKE57_06420 CDS
T09411
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RKE57_06420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_06420 (mfd)
Enzymes [BR:
sgen01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RKE57_06420 (mfd)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RKE57_06420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
SWI2_SNF2
ERCC3_RAD25_C
RecG_dom3_C
AAA_16
Motif
Other DBs
NCBI-ProteinID:
WNF11769
LinkDB
All DBs
Position
complement(1386331..1389795)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEA
DLQTLLGGDPALPVVAFPDWETLPYDRFSPHPDIISQRLSALHRLPTLKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVFP
MGSDEPLRVELLDEDIDSIRAFDPESQRSLDKVESVHMLPGREVPMDEASIARVLAALRE
RFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPDGSLPVVCAGAYEASVA
FWAQTGERYEQRRHDVERPLLPPSALYLSPELLRERLNDAPRIEVWSADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVVAD
LPAFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKSTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGIAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARESDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcctcgccgaccgccctggcctggtacctggcccaggccgcgcgcgcg
cacgacgcgccgctgctggtgatcgcccgtgacaaccacggtgccaaccagctcgaagcc
gacctgcagaccctgctcggcggcgacccggccctgccggtggtcgccttcccggactgg
gaaaccctgccctacgaccgcttcagcccgcatccggacatcatctcgcagcgtttgtcc
gccctgcatcgcctgcccacgctgaagcgcggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctatgtgatcggtggcagcttcgacctgaaggtcggc
cagcgcctggatctggaggccgagaagcgccgcctggaaagtgccggctatcgcaacgtg
ccgcaggtgatggaccccggcgacttcgccgtgcgcggcggcctgctcgacgtgttcccg
atgggttccgacgagccactgcgggtggaactgctggacgaggacatcgattcgatccgt
gcgttcgatccggaaagccagcgttcgctggacaaggtcgagtccgtgcacatgctgccc
ggccgcgaagtgccgatggacgaggccagcatcgcccgcgtgctggccgcgctgcgcgag
cgtttcgatgtggatacccggcgcagttcgctgtaccaggatctgaagtccgggctggcc
ccggccggcgtcgagtactacctgccgctgttcttcgaacgcaccgccaccctgttcgac
tacctgcccgacggcagcctgccggtggtctgcgccggtgcgtatgaagcgtccgtcgcg
ttctgggcgcagaccggtgagcgctacgaacaacgccgccacgacgtcgaacggccgctg
ctgccgccgtcggcgctgtacctgtcgccagagctgctgcgcgagcgcctgaacgatgcc
ccgcgcatcgaggtgtggtcggctgaccacgcgcgcatcgccgatgcccatgcgctgggt
gaccagccgctgccgccgctgccggtggccgcacgcgaggcccccgccggcgacgcactg
aaatccttcctcggccactacccgggccgggtgctgatcgccgccgattcgccaggccgt
cgtgaagccctgctggaagtgctgcaggccgccgagctgaagccgccggtggtggccgac
ctgcccgcgttcctcgccgacgatgcgcgcttcgcgatcgccgtggcgccgctggaggat
ggcttcgcgctggacgacccgcgcatcgcggtgctgaccgagcgccagctgttccccgag
cgcgccggcagcacccgccgcacgcgccgtgccggccgcgagccggaagcgatcatccgc
gacctcggcgaactgaccgagggcgcaccgatcgtgcatgaggaccatggcgtcggccgc
taccggggcctgatcgcgatggacgtcggcggcatgcccggcgaattcctcgaaatcgaa
tatgccaagggcgaccgcctgtacgtgccggtcgcccagctgcacctgatcagccgctac
tcgggcgcctcggcggaaaccgcgccgctgcattcgctgggtggcgagcagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgacgtcgctgccgagctgctggagatccag
gcccgccgccaggcgcgtgcgggtttggcactgcaggtggaccgcgcgatgtacgaaccg
ttcgcggccggcttcccgttcgaggaaaccccggaccagttggccgcgatcgatgccacc
ctgcgcgacctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtcgccgtgcgcgcggcgttcgccgccgccagtgccggcaagcaggtg
gccgtactggtgccgaccacgctgctggccgagcagcactaccgcaacttccgcgaccgt
ttcgccgattacccgctgaaggtcgaagtgctgtcgcgcttcaagagcaccaaggagatc
aaggccgagctggaaaaggtcgccgccggcaccatcgacgtgatcgtcggtacccatcgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggaacag
cgctttggcgtacgccagaaggaagcgctgaaggcgctgcgcgccaacgtgcacctgctg
accctgaccgccaccccgattccgcgcacgctcaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgtgaggccttccagcgcgagctcgcgcgcggtggccagctg
tacttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgccggaggcgcgcatcggcatcgcccatgggcagatgccggagcgcgagctggaaaag
gtgatgctggatttccagaagcagcgcttcaacgtgctgctgtcgaccacgatcatcgaa
tcgggcatcgacattcccaacgccaacaccatcatcatcaaccgtgccgaccgcttcggc
ctggcccagctgcaccagctgcgcggccgcgtcggtcgttcgcaccatcgcgcctacgcg
tacctggtggcgccggaccgccgatcgatcaccccggatgcggagaagcgcctggaagcg
atcgcgtcgatggacgaactgggcgccggcttcaccctggccacgcacgatctggagatc
cgcggtgccggtgaactgctcggcgaggaccagagcggacagatggccgaggtcggcttc
agcctgtacaccgaactgctggagcgcgcggtgcgcagcatcaagcagggcaagctgccc
gacctggatgccggcgaggaagtgcgcggcgccgaagtcgagctgcatgtgccggcgctg
attccggaagactacctgccggacgtgcacacccgcctgaccctgtacaagcgcatttcc
agcgcgcgcgaaagtgatgcgctgcgcgaactgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcggccaagcacctgttcgccatcgccgagctgaagctgaaagccaac
acgctgggcatccgcaagctggacctgggcgagaacggtggccgcatcgtgttcgagtcc
aagccgaacatcgatccgatggcggtgatccagctgatccagaaacaaccgaacctctac
gccatggaagggcccgacaagctgcgcatcaagcacccgctgccgttgccggaagaccgc
ttcaatgcggcccgtgcccttctgaccaccctcgccccgggttga
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