KEGG   Stenotrophomonas geniculata: RKE57_21275
Entry
RKE57_21275       CDS       T09411                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
sgen  Stenotrophomonas geniculata
Pathway
sgen03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:sgen00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    RKE57_21275 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sgen03400]
    RKE57_21275 (ligD)
Enzymes [BR:sgen01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     RKE57_21275 (ligD)
DNA repair and recombination proteins [BR:sgen03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     RKE57_21275 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: WNF10545
LinkDB
Position
4642733..4645219
AA seq 828 aa
MPLHQYRRKRRLGGGAGQTPEPDDTRVRGDPRRRPTFVIQLHHASSRHYDFRLEMDGVLK
SWAVPKGPSLRVGEKRLAVEVEDHPLSYATFEGDIPEGHYGAGHVEVFDQGTWACEGDPL
QALAAGKIDFVLHGQRLAGGWKLVRTAMKGRQVQWLLIKRDDGEARDAEADDLLTAPMPK
RAPAAKKRSAGKAVRSVPAARTTTRKADARWHACALQLHGARDTPYPRGFKPQLTYHRDS
APDGERWLHEIKWDGYRLLADLHDGEVKLRSRNGLDWTADFPEVVQAVRALPVRDARLDG
ELVVLDKKGRSDFAALQRVIDGSSKQPLRYIVFDLPGVAGVDISRAPLVERKALLKDLIG
PAPGTLAFSEHVINHGPQVFDASGEAGFEGIVSKQVDAPYVNTRARSWVKVKHEDTDEFV
IVGYTAPKGSRVGFGSLLLATPDKAGLRYVGRVGTGFDDESLRALLKALRPLAVKTPVLQ
LPVHVPFRAASVRWVTPVAVAEVAFRGWGKEGLLRQASFKRLRSDKQKEDLGMSTADAEA
GGEVQITHPERVVFPKQKLRKGDVADYYQRMARWILPEIAGRPLSLLRCPDGVGKACFFQ
KHHGAGLGDAVHAVPLQQKSGREDYVYIDDARGLLQLVQMNTLELHPWGATVADPEHPDR
LVFDLDPGEGVSWAQVKAAARDVRDRLQEAGLKSFVRLSGGKGVHVVVPLKPRADWEQAR
VFCEAFARAMAERAPDHYVATMSKAKRGGVIFIDWLRNTRGATSVCSWSLRARESAGVAV
PLRWEELARVGAADAFSMAKALARAKRLKADPWQGIDALKQTLPRMDL
NT seq 2487 nt   +upstreamnt  +downstreamnt
atgccgctgcaccagtaccggcgcaaacgccgacttggcggtggcgccgggcagacaccg
gagcctgacgacacgcgcgtccgcggtgatccgaggcggcggccgaccttcgtcatccag
ctgcaccatgccagctcgcgccactacgacttccgccttgagatggacggcgtgctgaag
agctgggcggtgccgaaaggtccttcgcttcgcgtcggtgagaagcggttggccgtggaa
gtggaagatcacccgctgtcctacgccaccttcgagggagacattcccgaaggccactac
ggcgcgggccacgtcgaggtgtttgatcagggtacctgggcctgcgaaggtgatcctctg
caggcactggcggcaggaaagatcgacttcgtgctgcatgggcaacgcctggccggtggc
tggaagctggtgcgcaccgcgatgaaaggacgccaggtgcaatggctgctgatcaagcgc
gacgatggtgaagcgcgcgacgccgaggcggatgacctgctgacggcaccgatgccgaaa
cgagcacctgcggcgaagaagcgttccgcagggaaggcggtgcgctcggtccccgccgca
cggacgaccacacgcaaggccgatgcgcgctggcatgcatgcgcactgcagctgcacggc
gcacgtgatacgccctatccccgcgggttcaaaccgcagttgacctatcatcgcgacagt
gccccggacggcgagcgctggctgcatgagatcaagtgggatggctatcggctgctggcc
gacctgcacgatggcgaggtgaaactccgctcgcgcaacggcctggactggacggccgat
tttcccgaggtcgtgcaggccgtgcgggcgctgccggtgcgtgatgcgcgactggacggt
gagctggtggtgctggacaagaaaggacgcagtgacttcgcagcgttgcagcgcgtgatc
gacggcagttcgaaacaaccactgcgctacatcgtgttcgatcttccgggtgtggccggc
gtggacatcagtcgtgcaccgctggtggagcgcaaggcgctgctgaaggacctcatcggg
ccagcgcccggcaccctggccttcagcgaacacgtgatcaaccatgggccgcaggtattc
gatgccagcggcgaggccggctttgaaggcatcgtcagcaagcaggtggatgcgccgtac
gtgaatacccgcgcgcgcagctgggtgaaggtgaagcacgaagacaccgacgagttcgtg
attgtcggctacacggcacccaagggttcccgggtgggattcggttcgctgcttctggcc
acgccggacaaggccggcctgcgctatgtcggccgcgttggcaccggcttcgacgatgaa
agcctgcgcgcgctgctcaaggcactgcggccgttggcagtgaagacgcccgtgctgcag
ctgccggtgcatgtgccgtttcgcgctgccagcgtacgctgggtgacaccagtggcggtg
gcggaggtggcgttccgtggctggggcaaggaaggcctgctgcgccaggccagtttcaag
cggctgcgcagcgacaagcagaaggaggacctgggaatgagcaccgcagatgccgaagcc
ggaggtgaggtccagatcactcatccggagcgggtggtgtttccaaagcagaaactgcgc
aagggcgacgtggccgactactatcagcgcatggcgcgctggatcctgcccgaaatcgcc
ggacgtccactgtcactgctgcgctgcccggacggcgtaggcaaggcttgcttcttccag
aagcaccatggtgccggcctgggcgatgcggtacatgcggtgccgctgcagcagaagagc
gggcgcgaggattacgtttacatcgacgacgcacggggcctgctgcagctggtgcagatg
aacaccctggagttgcatccctggggtgcaaccgtcgccgaccccgagcatccggatcgg
ctggtgttcgatcttgaccctggagaaggcgtcagctgggcacaggtgaaggccgctgcg
cgtgacgtccgtgaccgcctgcaggaggccggcctgaagagcttcgtgcggttgtccggt
ggcaagggcgtgcacgttgtggtgccgctgaagcccagggccgactgggaacaggccagg
gtgttctgcgaggcatttgcccgggcgatggcggagcgcgcgccggaccactacgtggcg
accatgagcaaggccaagcgtggcggcgtcatcttcatcgactggctgcgcaatacgcgg
ggcgccaccagcgtgtgctcgtggtcgctgcgtgcgcgcgaaagtgccggtgtggcggta
ccgctgcgctgggaggaactggcacgcgtcggtgcggccgatgcgttttcgatggccaag
gcgctggcgcgcgcgaagcggctgaaagcggatccgtggcagggcatcgatgcgttgaag
cagacgctgccgcggatggacctgtag

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