Sinocyclocheilus grahami (golden-line barbel): 107571605
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Entry
107571605 CDS
T04918
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107571605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sgh03041
]
107571605
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107571605
Spliceosome [BR:
sgh03041
]
Complex A
U2 snRNP components
U2 related factors
107571605
Complex B
107571605
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
PMI_typeI_cat
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
107571605
NCBI-ProteinID:
XP_016113420
LinkDB
All DBs
Position
Unknown
AA seq
1036 aa
AA seq
DB search
MEKTLCVCDCVCVCRHYRKRSSSKGRSGSRSKSRSPDSKRSKKEEQTGSRTRERSRRERS
RRSRSRERKRPRRSRSRDRRRSRSRERRSQGRSKEKSENTEPSADKKKIKEEKEEEKAED
QDFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGELKKELEEMKQGKKWSLEDDDDDDE
ETQAPVEPDEEEEEGEKDISPGTEEETQMEQETGEELDPLDAYMEEVKEEVKKFNMGTMK
GGNDKKGSVSVTKVMTVMKTKKMVHTTKKKGELMENDQDAMEYSSEEEEVDLQTALTGFQ
TKQRKVLEPVDHQKIEYESFRKNFYVEVPELFRMSPEEVNEYRLELEGIAVKGKGCPKPI
KTWVQCGISMKVLNAMKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMF
RHILDQRPVGEAEGPIAMIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQIAE
LKRGAEIIVCTPGRMIDMLGANNGRVTNLRRVTYVVMDEADRMFDMGFEPQVMRIVDNVR
PDRQTVMFSATFPRTMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIAEEKKFLKLLE
ILGHYQEKGSVIIFMDKQEHADGLLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACR
LLVATSVAARGLDVKQLILVINYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEEQARYS
GDIIKALELSGSAVPPELELLWTNFKEQQKAEGKSIKSSSGFSGKGFKFDETEHALANER
KKLQKAALGLHDSDDEDAALDIDEQIESMFNSKKRVKDLSAPGGSAGAAAGGVSGSVTAV
SGLSTPSAGNIQKLEIAKKLALKIQVQKNLGAEAQDVMQQATNAILRGGTMIAPSVSAKT
IAEQQAEKINAKLNYTPVEKLEEERQAAEATDTVKRYEEELEINDFPQTARWKVTSKEAL
QRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLIKEELIR
LQNSYQPTSKSRYKVL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggagaagacgctgtgcgtgtgtgactgtgtctgtgtctgcaggcattacaggaagcgc
tccagctcgaagggccggtccggcagcaggtctaagagccggtcgccagactccaagcgc
tctaagaaggaggagcagacgggatcccgcacccgcgagcgcagccgcagagagaggtca
cgcaggtcacgctccagagaacgcaagagaccgaggcgctccaggagtcgagacaggaga
cgctcacgcagccgagagcgcaggagccaagggaggagcaaggagaagtctgagaacaca
gagccgtccgctgacaagaagaagatcaaggaggagaaggaggaggagaaggctgaagat
caggactttgaccagaacactctggaggaggagatgaggaagaggaaggagcgagtggag
aagtggagggaggagcagaggaagaaagccatggagaacatcggagaactcaagaaggag
ctggaggagatgaagcaggggaagaagtggagtctggaggacgatgacgatgacgatgag
gagactcaagcgcccgtggagccggacgaagaggaagaggagggagagaaagacatatcg
cctgggacagaggaggagacacagatggagcaggagaccggagaagagctggaccctctg
gacgcttacatggaggaggtcaaagaggaggtcaagaagttcaacatgggcaccatgaaa
ggaggcaatgacaagaaaggcagtgtgtctgtgaccaaagtgatgaccgttatgaagacg
aagaagatggtgcacaccaccaagaagaaaggagagctgatggagaacgaccaggacgcc
atggagtattcatcagaggaagaggaagtggacttgcagacggccctcacaggctttcag
accaaacagaggaaagttctggagccggttgatcatcagaagatcgagtacgaatccttc
cgcaagaacttctatgtggaggtgccggagctgttcaggatgagccctgaagaggtgaac
gagtaccgtctggagctggagggaatcgctgtcaaaggcaaaggctgtccgaagcccatc
aagacgtgggtgcagtgtgggatatccatgaaagtgctgaacgcgatgaagaaacacaac
tatgagaagccgaccccgatccaggcccaggctatcccagccatcatgtcgggacgcgac
ctcatcggcatcgctaaaacaggaagcgggaaaaccatcgccttcctgctgcccatgttt
cgccacatcttagaccagcggccggtgggagaggcagaaggacctatcgccatgatcatg
acgccgacgcgagagctggcgctgcagatcaccaaagagtgcaagaagttctccaagtct
ctgggtctgcgtgtggtgtgtgtgtacggcggcaccggcatcagcgagcagatcgcagag
ctgaagcgcggcgcagagatcatcgtgtgcactccgggacgcatgatcgacatgctcggt
gctaacaacggtcgcgtgactaatctgcgcagggtcacgtatgtggtgatggacgaggct
gaccggatgttcgacatgggctttgagccgcaggtgatgcgtatcgtggataacgtgcgg
cccgaccgacagacggtgatgttctcggccacgttcccgcgcacgatggaggctctggcg
cgcaggatcctgtccaaacccatcgaggtgcaggtgggaggcaggagcgtggtgtgctca
gacgtggagcagcacgtgattgtgatcgcggaggagaagaagttcctgaagctgctggag
attctgggtcactatcaggagaagggctccgtcatcatcttcatggacaagcaggagcac
gccgacggcctcctcaaagacctgatgaaggcctcgtacccctgcatgtctcttcacgga
ggcatcgatcagtacgacagggacagcatcatcaatgacttcaagaacggcgcgtgtcgt
ctgctggtggccacctcggtggcggctcgaggcctggacgtcaagcagctcatcctggtg
attaactacagctgtcccaaccactacgaggactacgtgcaccgcgccggacgcacggga
cgtgccgggaacaagggttatgcgtacaccttcatcactgaggaacaggcccggtactcc
ggagacatcatcaaagcgctggagctgtccggatcggccgtgccgccggagctcgagctg
ctctggaccaacttcaaagagcagcagaaagccgaggggaagagcatcaagagcagcagc
ggattctctggcaagggctttaagttcgatgagactgagcatgcgctggctaacgagagg
aagaagctgcagaaggctgcgttaggcctgcatgactctgatgatgaggatgcggctctg
gacatcgacgagcagatcgagagcatgtttaactctaagaagcgtgtgaaggatctctct
gctccgggtggctctgcgggagccgctgctggcggtgtgagcggatctgtgaccgctgtg
tccggtctgagcactccgtccgccggaaacatccagaaactggagatcgccaagaaactg
gccctcaagatccaggtgcagaagaacctcggcgcagaggctcaggatgtgatgcagcag
gccacaaacgccatcctgcgcggcgggacgatgatcgcgccctccgtctcggccaagacc
atcgcggagcagcaggcggagaagatcaacgccaaactgaactacactccggtggagaag
ctggaggaggagcggcaggccgccgaggccacggacaccgtcaagagatacgaggaggag
ctggagatcaacgacttccctcagacggcgaggtggaaggtgacgtcgaaggaggctctt
cagcgcatcggcgagtattcagaggcggccatcactatccgaggaacatatttcccaccg
ggcaaagagcccaaagagggagagcgcaagatctacctggccatcgagagtgccaacgag
ctggctgtgcagaaggccaaagcagagatcacacggctgatcaaagaggagctgatccgt
ctgcaaaactcgtaccagcccaccagcaaaagcagatacaaggttttgtag
DBGET
integrated database retrieval system
