Sinocyclocheilus grahami (golden-line barbel): 107596255
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Entry
107596255 CDS
T04918
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03013
Nucleocytoplasmic transport
sgh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107596255 (upf1)
03015 mRNA surveillance pathway
107596255 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgh03019
]
107596255 (upf1)
Enzymes [BR:
sgh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
107596255 (upf1)
5.6.2.5 RNA 5'-3' helicase
107596255 (upf1)
Messenger RNA biogenesis [BR:
sgh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
107596255 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
107596255 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
YusW
Motif
Other DBs
NCBI-GeneID:
107596255
NCBI-ProteinID:
XP_016142430
UniProt:
A0A672R466
LinkDB
All DBs
Position
Unknown
AA seq
1099 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGVLPNGEDAVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDMAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSGTGRPSNMYFQTHDQVGMIGTGPNPMGSMN
IPIPFNLVMPPMPPPGYLGQVNGPAAGRGAPKGKTGGRGGRQRNRGTGNHGSGQPNMPSS
QASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDVALSQD
STYQGERAYQHGVTGLSQY
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcgcagacgctcaccttcctggacacggaggaa
gcggagctgctcggggccgacacgcagggctccgagttcgagttcaccgacttcacgctg
cccagccagacccaaactcagggccagacccagagccaactcgacaaccaggtgaacggg
cctgatggcgttctgcccaacggagaggatgcagtggtgaagaccagccaacttctggcc
gagctgaactttgaggaggatgaggaagatacgtactacactaaagacctgccggtgcac
gcctgcagctactgtggtatccatgatccagcatgtgtggtctattgcaacaccagcaag
aaatggttctgcaacggccgcggtaacacctctggcagtcatattgtgaaccacttggtg
agggccaaatgtaaggaggtgacgctgcataaggacggaccgctgggagagacggttctg
gagtgctataactgcggctgccgtaatgtcttcctactcggcttcatcccggctaaagcc
gactctgttgtggtgcttctctgcaggcagccatgtgccagtcagagcagtctgaaggac
attaattgggacagctctcagtggcagcccctcatccaggaccgctgcttcctgtcctgg
ctcgtgaagatcccgtccgagcaggagcaactgagggcccgtcagatcacggcacagcag
atcaataaactcgaggagctctggaaggaaaacccaacagcgaccctggaagatttggag
aaacctggagtggatgaggaacctcagcatgttctgctacgctacgaagatgcctatcag
taccagaacatctttgggccgctggtcaaactagaggccgactatgacaagaaactcaaa
gagtcccaaactcaagacaatattacagtgaggtgggatttgggactgaataaaaagcgg
atagcttatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggagac
gagatctgtctgcgctataaaggagacatggctccgctgtggaaaggaatcggacacgtc
atcaaagtcccagacaattatggagatgaaattgccatcgagctgcgcagcagtgctggt
gctcctgtggaggtgccacataactttcaggtggactttgtctggaagtcgacatctttt
gaccgaatgcagagcgccttgaagacgtttgccgtggatgagacctctgtgtccggctac
atctaccacaagctgctgggtcatgaggtggaggacgttatcatcaaatgccagctgccc
aaacgcttcactgcacagggcctgccagacctcaaccactcgcaggtttatgctgtgaag
acggtgctgcagcgacctctcagtctgatccaggggcctccaggaaccggaaagactgtc
acctctgccaccatcgtctaccatctggccagacagggcaatggtccggtgctggtttgt
gctccgagtaacatcgcagtggatcagctgacagagaagatccatcagacggggctgaag
gtggttcgtctgtgcgctaagagtcgtgaggccatagattcacctgtgtctttcttggct
ctgcacaatcagatccgcaacatggacagcatgccagagttgcagaaactgcagcagctg
aaggacgaaactggcgagctgtcgtcttctgatgagaaacgttaccgagctctcaaacga
accgctgagagagagctgctcatgaatgcagatgtgatctgctgcacatgcgtgggtgcg
ggtgaccctcgcctggctaaaatgcagtttcgctccatccttattgatgagagcacacag
gccacggagcccgagtgcatggtgccagtggtgctcggggccaaacagctgattctggtg
ggtgaccactgtcagctgggtcctgtggtcatgtgcaagaaggcggctaaagcaggtctg
tctcagtctctgtttgagaggctggtggtcctgggcatcagacccatccgtctgcaggtg
cagtaccgcatgcacccggccctcagcgctttcccttcaaatatcttctacgagggctct
ctgcagaacggcgtcaccgctgctgatcgcatcaagaaaggctttgactttcagtggcct
cagcctgataagcccatgtttttctacgtgacccagggccaggaggagattgcgagttct
ggcacctcctatctcaacaggactgaggctgctaatgtggagaagatcaccacccgtctg
ctgaaggccggagccaaacctgaccagatcggcataattacaccatacgagggccagcgc
tcttacctggtgcagtacatgcagttcagcggctcactgcacaccaaactataccaggag
gtggagatcgccagcgtggatgcgttccagggcagagagaaggacttcatcatcctgtct
tgtgtcagagctaacgagcaccagggcatcggcttcctgaacgacccgcgtcgtctcaat
gtggcgctaaccagagccagatatggcgtgatcattgtgggcaatcctaaggctctgtcc
aagcagcctctgtggaaccacctgctgaactactacaaggagcagaaggttctggtggag
ggaccgctgaacaacctgagggagagcctcatgcagttcagcaaaccacgcaagctggtc
aacaccatcaaccctggagcccgtttcatgagtaccgccatgtatgatgcgagagaggcc
atgattcctggatctgtgtatgatcgcagcggcactggacgtccatctaatatgtacttc
cagactcatgaccaggtcggcatgatcgggactgggccgaacccaatgggctccatgaac
atccccatcccgttcaatctggtcatgccgcccatgcctccgcctgggtacctgggccag
gtgaacggacctgctgccggtcgtggtgctcctaaaggtaagaccgggggtcgcggaggt
cgtcagaggaaccgtggcactggtaaccacggcagcgggcagcccaacatgccaagcagc
caggccagtcaggacctggggtcccagcccttctctcagggtccactgacccagggctac
atcaccatgagccagccttcacagatgagccagcctggactgtcccagcctgagctctca
caggacagctacctgggtgatgagttcaaatcccagatggatgtggcactttcccaggat
tccacctaccagggcgaacgggcatatcaacacggagtgactggactctcacagtactag
DBGET
integrated database retrieval system
