Sphingopyxis granuli: SGRAN_0896
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Entry
SGRAN_0896 CDS
T04372
Name
(GenBank) DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
sgi
Sphingopyxis granuli
Brite
KEGG Orthology (KO) [BR:
sgi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgi03032
]
SGRAN_0896
03400 DNA repair and recombination proteins [BR:
sgi03400
]
SGRAN_0896
Enzymes [BR:
sgi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SGRAN_0896
DNA replication proteins [BR:
sgi03032
]
Prokaryotic type
DNA Topoisomerases
SGRAN_0896
DNA repair and recombination proteins [BR:
sgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SGRAN_0896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AMG73290
UniProt:
A0AA86GI48
LinkDB
All DBs
Position
complement(953372..954382)
Genome browser
AA seq
336 aa
AA seq
DB search
MPRARLIHVDDSLPGIRRERAGDGWRYRDAKGRLIRDRAEIARLDAVALPPAYEDAWFCP
APNGHILATGYDARGRKQYRYHPDFRLARDAGKYDRCAAFGHALPLLRARLQDDLSRRTL
CQERVVAAVVRLLDLAALRVGNEEYAAANNSFGATTLRQRHARLSGATLRLSYRAKGGAR
REVTISDRNLATLVRRLQDLPGQHLFQYRDADGTHAVASDDVNVYIREAMGEDFSAKHFR
TWWGSVEAFAFLYEAPEPPPLKAVLGHVAARLGNTPAVARRAYVHPAMIAAAQARADFAQ
AAGRLPRATRYLSRYERGFLTYLEQAPDAATLLRSA
NT seq
1011 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgcccgcctgatccatgtcgacgacagcctgcccggcatccgccgcgaacgc
gccggcgacggctggcgctatcgcgacgcgaaaggccggctgatccgcgaccgcgccgaa
atcgcgcggctcgacgccgtcgcgctgccgcccgcctatgaggatgcctggttctgcccg
gcgccgaacggccatatccttgccaccggctatgacgcgcgcgggcgcaagcaatatcgc
tatcatcccgatttccggctggcgcgcgacgcgggcaaatacgaccgctgcgctgccttc
ggccatgcgctgccgctgctgcgcgcgcggcttcaggacgatctttcccgccgcacgctc
tgccaggagcgcgtcgtcgcggcggtcgtccggctgctcgacctcgctgcgctgcgcgtc
gggaacgaggaatatgccgccgcgaacaacagcttcggcgccaccacgctgcgccagcgc
cacgcgcggctgtcgggcgcgacgctgcgcctcagctatcgcgccaagggcggcgcgagg
cgcgaagtgacgatcagcgaccggaatctggcgaccctcgtccgccggctgcaggacctg
cccggccagcatctgttccagtatcgcgacgccgacggcacccacgcggtcgcgtcggac
gacgtcaacgtctatatccgcgaggcgatgggggaggatttcagcgccaagcatttccgc
acctggtggggcagcgtcgaggccttcgccttcctgtacgaggcgcccgaaccgccgccg
ctcaaggcggtgctcggccacgtcgcggcgcggctcggcaacacccccgcggtcgcgcgg
cgcgcctatgtccacccggcgatgatcgccgccgcgcaggcccgcgccgacttcgcgcag
gcggcggggcggctgccgcgcgcgacccgctatctttcgcgttacgaacgcggatttttg
acctatctggagcaggcgcccgatgccgcgacgctgctccggtccgcctga
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