Streptomyces goshikiensis: PET44_13425
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Entry
PET44_13425 CDS
T09307
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgk
Streptomyces goshikiensis
Pathway
sgk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PET44_13425 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgk03400
]
PET44_13425 (mfd)
Enzymes [BR:
sgk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PET44_13425 (mfd)
DNA repair and recombination proteins [BR:
sgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PET44_13425 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
4HBT_3
Motif
Other DBs
NCBI-ProteinID:
WBY20539
LinkDB
All DBs
Position
complement(3118789..3122322)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVTRDPALAEAVTAAGDGNRMHVDLVGPPAARPFAIAALARRTERTVLAVTA
TGREAEDLAAALRSLLPPDEVAEYPSWETLPHERLSPRSDTVGRRIAVLRRLAHPSKDDP
AAGPVSVVVAPIRSVLQPQVKGLGDLVPVSLRQGESADLGEVTQALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDEVRERAAALAVEHPELGELLNKIAEGIAVEGMESLAPVLVDDMELLIDVLPAGAMAV
VCDPERVRTRAADLVATSQEFLMASWAATAGGGDAPIDVGAASLRGIADVRDHARELGMM
WWSVSPFAADDTDLSTDTLKLGMHAPEAYRGDTARALADTKGWIADGWHTVYLTEGHGPA
ARTVEVLGGEGIAARLEADLRTLEPSLVHVACGSLDNGFVDPALKLAVLTETDLTGQRTA
SKDLGRMPTRRRKAIDPLTLEVGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHTFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVKVKALSRFQSDTESK
ATLEGLKEGSVDIVIGTHRLFSQETRFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQCF
YIHNRVESIDRAAAKLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAIDGG
AEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEADVKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGDITLQGPNVRFGPVELRESQELRLKRLYPGAVLKPAT
SQVLIPRPKTARVGGKPLVGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgccgtcacccgggaccccgccctcgccgaggcggtc
accgcggccggggacggcaaccggatgcacgtggacctcgtcggcccgcccgccgcgcgg
cccttcgcgatcgccgcgctggcccgccgcaccgagcggaccgtgctcgcggtgaccgcc
accgggcgcgaggccgaggacctggccgccgcgctgcggtccctgctgccgccggacgag
gtggcggagtacccgtcctgggagaccctgccgcacgagcggctctcgccgcgcagcgac
accgtgggccggcggatcgccgtcctgcgccggctcgcgcaccccagcaaggacgacccc
gccgccgggcccgtctccgtcgtcgtcgcgccgatccgctccgtgctccagccgcaggtc
aaggggctgggggacctcgtaccggtgagcctgcgccagggcgagagcgccgacctcggc
gaggtgacgcaggcgctggcggcggccgcgtacgcccgcgtcgagctcgtcgagaagcgc
ggcgagttcgccgtgcgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccg
ctgcgcgtggagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcggtccctggaggtcgccgagcacgggctgtgggccccgccctgccgcgagctgctg
ctgaccgacgaggtgcgcgagcgggccgcggccctggccgtcgagcatcccgagctcggc
gaactgctgaacaagatcgccgaggggatcgccgtcgagggcatggagtccctcgcgccc
gtcctcgtcgacgacatggaactgctgatcgacgtcctgcccgccggggccatggccgtg
gtctgcgaccccgagcgggtccggacccgggccgccgacctggtggcgacctcgcaggag
ttcctgatggcctcctgggctgccaccgcgggcggcggcgacgcccccatcgacgtcggc
gcggcctccctgcgcgggatcgcggacgtccgcgaccacgcccgcgagctcggcatgatg
tggtggtcggtgtcccccttcgccgccgacgacaccgacctgagcaccgacaccctgaag
ctcggcatgcacgcccccgaggcctaccgcggcgacaccgcccgcgcgctcgccgacacc
aagggctggatcgccgacggctggcacaccgtctacctcaccgagggccacggcccggcc
gcccgtaccgtcgaggtgctcggcggggagggcatcgcggcccgcctggaggcggacctg
cggaccctggagccctccctcgtccacgtggcgtgcggctccctcgacaacgggttcgtc
gacccggcgctgaagctggccgtcctcaccgagaccgacctgaccggccagcgcaccgcc
agcaaggacctgggccggatgccgacccggcgccgcaaggccatcgaccccctcaccctg
gaggtcggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtg
cagcgcaccgtccagggcgccacccgcgagtacctcctcgtcgagtacgcccccgccaag
cgcggccagcccggcgaccgcctctacatccccaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggccccgaccctgcaccggctcggcggcgccgactggaccaagacc
aaggcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctctacagc
gcccgcatggccgcccccggccacaccttcggccccgacaccccctggcagcgcgaactg
gaggacgccttcccgtacgcggagacgcccgaccagctcaccaccatcgccgaggtcaag
gaggacatggagaagtccgtccccatggaccgcctgatctgcggagacgtcggctacggc
aagaccgagatcgccgtgcgggcggccttcaaggcggtccaggacggcaagcaggtcgcc
gtcctcgtccccaccaccctgctggtgcaacagcacttcggcaccttctccgagcgctac
agccagttccccgtcaaggtgaaggcgctgtcccgcttccagagcgacaccgagtccaag
gccaccctggagggcctgaaggagggctcggtcgacatcgtcatcggtacgcaccggctg
ttctcgcaggagaccaggttcaaggacctgggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtcgacgtactgacc
atgtccgcgaccccgatcccgcgcaccctggagatggcggtgaccggcatccgcgagatg
tcgaccatcaccaccccgccggaggagcgccacccggtgctcaccttcgtcggcccctac
gaggagaagcagatcggcgcggccgtccgccgcgagctgctccgagagggccagtgcttc
tacatccacaaccgggtcgagtccatcgaccgggccgccgccaagctgcgcgagatcgtg
cccgaggcgcggatcgccacggcgcacgggcagatgtccgaacaggccctggaacaggtc
gtcgtggacttctgggagaagaagttcgacgtcctcgtctccacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctcatcgtggagcgcggcgacaacttcggcctc
tcccagctccaccagctccgcgggcgggtgggccggggccgcgagcgcgggtacgcgtac
ttcctctacccgccggagaagccgctgaccgagacggcgcacgagcggctcgcgacgatc
gcccagcacaccgagatgggcgccggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctcggcggcgagcagtccgggcacatcgccggcgtcggcttcgac
ctctacatccggatggtcggcgaggccgtggccgactaccgggcggcgatcgacggcggg
gccgaggaggagccgccgctggaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgcgccttcaggcgtaccgcgccatcgcctccgcg
aactccgaggcggacgtcaaggccgtccgggaggagctcaccgaccgctacggcaagctg
ccggagccggtggagaacctgctgctggtggcggggctgcggatgctggcgcgggcctgc
ggggtcggggacatcaccctccagggccccaacgtccgcttcgggcccgtggagttgcgc
gagtcgcaggagctgaggctcaagcggctctacccgggcgcggtgctcaagccggccacc
tcgcaggtgctgatcccgcggccgaagacggcccgggtcggcggcaagccgctggtcggc
cgggaactgctcgcctggaccggggagttcctcaccacgatcctcggatcctga
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