Sodalis glossinidius: SG0135
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Entry
SG0135 CDS
T00316
Name
(GenBank) RNA polymerase beta prime subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sgl
Sodalis glossinidius
Pathway
sgl03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sgl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SG0135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgl03021
]
SG0135
03400 DNA repair and recombination proteins [BR:
sgl03400
]
SG0135
Enzymes [BR:
sgl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SG0135
Transcription machinery [BR:
sgl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SG0135
DNA repair and recombination proteins [BR:
sgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SG0135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
LPD39
Motif
Other DBs
NCBI-ProteinID:
BAE73410
UniProt:
Q2NWR5
LinkDB
All DBs
Position
221706..225926
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERYGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVVEGGMTNLERRQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKNMDLEQECEQLREELEETNSETKRKKLTKRIKLLEAFVLSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDRVNGKGEGMVLTGPKEAERIYRAG
VAELHARVKVRITEHEKRDNGESVENTHLVDTTVGRAILWMIVPKGLPFSLVNQALGKKA
ISKMLNTCYRVLGLKPTVIFADQIMYTGFAYAARSGSSVGIDDMVIPAKKAEIIDEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANERVAKAMMDNLSTEAVINRDGEEERQVSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTFAGIVMTPVIEGGDVKEPLRERVL
GRVTAEDVLKPGTADILVERNTLLNEKWCDVLEENSVDSVKVRSVVTCDTDFGVCANCYG
RDLARGHLVNKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGTIRL
SNAKFVVNGSGKLVITSRNTELKLVDEFGRTKESYKVPYGAVMAKGDGAEIMGGETVANW
DPHTMPVITEVDGFVRFTDMIDGQTITRQTDELTGLSSIVILDTAERTSGGKDLRPALRI
VDANGNDVLLPGTDMPAQYFLPGKTIVQLEDGAKITGGDTLARLPQETSGTKDITGGLPR
VADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVISPVDGSDAYEEMIPKWRQLNVFE
GERVERGDVISDGPESPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIASSGSSEFLEGEQVEYSRIKIANRQLENDGKVEMTYVRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQERARHRQQGEAPA
APQITADEASANLAELLNAGLGGNDD
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagatttacttaagtttctgaaagcgcaaactaagaccgaagagtttgatgcgatc
aaaattgcgctggcctcgccagacatgatccgttcctggtcgttcggtgaagtgaaaaag
ccggagaccatcaattaccgcacctttaaaccggagcgctatggtctgttctgcgcccgt
atttttgggccggtcaaagactatgaatgcctgtgcggtaagtacaagcgtttgaaacac
cgcggcgttatctgtgagaaatgcggcgttgaagtgacccagaccaaggtgcgccgtgag
cgtatgggtcatatcgagctggcttcgcccactgcccatatctggtttttgaaatcgctg
ccgtcccgtatcggtctgctgttggatatgccgctgcgcgatattgaacgcgtgctgtat
tttgaatcctatgtcgtggttgaaggcggcatgaccaaccttgaacgccgtcagattctg
actgaagagcagtatctggacgcgctggaagagttcggtgacgaattcgacgccaagatg
ggcgccgaagcgatccaggccctgttgaaaaacatggatttggagcaggaatgcgagcag
ctgcgcgaagagctggaagaaaccaactctgaaaccaagcgcaagaagctgaccaagcgc
atcaagctgctggaagccttcgtgctgtccggcaacaagccggaatggatgattctgacc
gtgttgccggtactgccgccggatctgcgcccgctggtaccgttggacggcggtcgcttt
gcgacgtcggatctcaacgatctgtatcgccgggtgatcaaccgtaacaaccgcttgaag
cgtctgttggatctggccgcgccggatatcatcgtgcgtaacgaaaagcgtatgctgcaa
gaagcggtcgatgcactgctggataacggccgtcgcggccgtgccattaccggttccaac
aagcgtccgctgaaatccctggccgacatgatcaaaggtaagcaaggtcgcttccgccag
aacttgctcggtaaacgtgtcgactactccggccgttcggttatcaccgttggtccgtac
ctgcgtttgcatcagtgcggcctgcctaagaaaatggcgctggagctgttcaagcctttc
atttacggcaagctggagctgcgtggtctggcgaccaccatcaaggcggccaagaaaatg
gtcgagcgcgaagaggccgtggtgtgggatatcctcgacgaggtcatccgcgagcacccg
gtcatgctgaaccgtgcgccgacgctgcaccgtctggggatccaggcgtttgagccggta
ctgattgaaggtaaagccattcagctgcacccgctggtgtgtgcggcatacaacgccgac
ttcgacggcgaccaaatggcggtccacgtgccgctgacgctggaagctcagctggaagcg
cgcgcgctgatgatgtcgaccaataatatcctgtcgcccgccaacggcgagccgattatc
gtgccgtcccaggacgtcgtgctgggtctatattatatgacccgcgatcgtgtcaacggc
aagggcgaaggcatggtgctgaccgggccgaaagaagcggaacgcatttaccgcgccggc
gtggccgagctgcatgcccgtgttaaagtgcgtatcaccgagcacgagaaacgagacaac
ggcgaatcggtagaaaacacccatctggtagacaccaccgttggccgcgccatcctgtgg
atgattgtaccgaaggggctgccgttctcgctagtgaaccaggcgctgggtaaaaaagcc
atctccaagatgctcaatacctgctatcgcgtgctgggtctgaagccgaccgtcatcttc
gccgaccagatcatgtacaccggtttcgcctacgccgcccgttctggctcgtctgtcggc
atcgacgatatggtgattccggcgaagaaagccgaaattatcgatgaagccgaagccgaa
gttgccgagatccaggagcagttccagtcgggtctggtcaccgcaggcgaacgttataac
aaggtaatcgatatttgggccgcggctaacgagcgcgtcgccaaggcgatgatggacaac
ctgtccaccgaagccgtgattaaccgtgacggcgaggaagagcgtcaagtctcgttcaac
agcatctttatgatggccgactccggcgctcgtggttcggcggcgcagattcgtcagctg
gccggtatgcgtggtctgatggccaagcccgatggctcgatcattgagacgccgattacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacccacggtgcacgt
aaaggtctggcggacaccgcgctgaaaaccgctaactccggttacctgacccgccgtctg
gtcgacgtggcgcaggatctggtggtgaccgaggacgactgcggcaccttcgccggtatc
gtgatgacgccggttatcgaaggtggcgacgtcaaagagccgctgcgcgagcgcgttttg
ggccgcgtcacggcggaagatgtcctgaaaccgggcaccgcggatattctggtcgagcgt
aataccctgctgaacgagaagtggtgtgacgtgttggaagaaaattccgtcgacagcgtc
aaagtgcgttcggtcgtgacctgcgacaccgatttcggcgtgtgcgccaactgctacggc
cgcgatctggcgcgtgggcatctggtgaacaagggcgaagccatcggcgttatcgccgct
cagtccatcggcgaacctggcacgcagctgaccatgcgtacattccacatcggcggggcc
gcgtcccgtgctgcggcggaatccagtattcaggtgaaaaacaaagggactatccgtctc
agcaatgccaagttcgtggtaaacggcagcggcaagctggtgatcacctcgcgtaacacc
gagctgaagctggttgacgaattcggccgtaccaaagaaagctataaggtgccttatggc
gctgtgatggccaaaggcgacggcgcggagatcatgggcggcgaaaccgttgccaactgg
gatccgcataccatgccggttatcaccgaagtcgacggtttcgtccgcttcaccgatatg
atcgacggccagaccattacccgccagaccgacgaactgactggtttgtcctctatagtg
atactggataccgccgagcgtaccagcggcggtaaagatctgcgtccggcgctgcgcatt
gtcgacgctaacggtaacgatgtgctgttgccgggtaccgacatgccggcgcagtacttc
ctgccgggcaaaacgatcgtgcagctggaagacggcgccaaaatcaccggcggtgatacg
ctggcgcgtctgccgcaggaaaccagcgggaccaaggatatcaccggtggtctgccgcgc
gttgccgatctatttgaagcccgtcgtccgaaagagccggcgattctggccgagatcagc
ggtattgtttccttcggtaaagaaaccaaaggtaaacgtcgtctggttatctcgccggtg
gacggcagcgacgcatacgaagagatgatcccgaaatggcgtcagctcaacgtatttgaa
ggtgaacgcgtggagcgcggtgatgtgatttccgacggtccggaatcgccgcacgacatt
ctgcgtctgcgtggcgtccatgcggtaacccgctatatcgtcaacgaagtccaggacgtc
taccgtctgcagggcgtgaagatcaacgataaacacattgaagttatcgttcgtcagatg
ttgcgtaaagcaacgatcgccagcagcggcagctcggagttcctggaaggcgaacaggtg
gaatactcgcgcatcaagattgccaaccgtcagttggaaaacgacggcaaggtagagatg
acttatgtgcgtgatctgctgggtatcaccaaagcctcgctggccactgagtcgtttatc
tccgcggcgtcgttccaggaaaccacgcgcgtgctgaccgaagccgctgtggccgggaaa
cgcgatgaactgcgcggcctgaaggaaaacgtcatcgtcggacggttaatcccggccggt
accggttacgcttatcatcaggaacgcgctcgccatcgtcagcagggcgaagcgccggcc
gcgccgcagattaccgccgatgaagcttccgccaacctggctgaactgttgaatgcgggt
ctgggcggcaacgacgactga
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