Shewanella glacialimarina: FJ709_08520
Help
Entry
FJ709_08520 CDS
T07885
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FJ709_08520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_08520
Enzymes [BR:
sgla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FJ709_08520
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FJ709_08520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UCX04537
LinkDB
All DBs
Position
complement(1977578..1981087)
Genome browser
AA seq
1169 aa
AA seq
DB search
MKQFSVIAPPSVKKGQQQQVLTTLGGVSQALTVANLINQHSGTSLIVTHDTPSALTLEAE
LSYLLANTGVNVCLFPDRETLPYDSFSPHQDLISQRLESLAQISQSNHNVVIVPVNTLMV
RLPPKSFLTANVMILKKGDIYSLDQVRQHLTDTGYHIVDQVYEHGEFAIRGSIIDIFPTG
SKQPLRIELFDDEVETIRFFDVDTQRSGMALEQIRMLPAKEFPTDSAAIEGFRLRYRRRF
EVISKEAESVYQSVSRNIMPAGIENYLPLFFDESSSLFDYLPEQSQLITLGDIDKACEHH
LQEVHSRYEDRRVDPLRPLLEPKELYLLADQLFAAFKPMPRSQVINAVFDEQGQINPDSQ
PKHALLAKANSISDINANHKLKQPLLALQEYSQQHPQMLFVAESEGRREALIELLAKIGI
KPKLFKHIDDYVTAKEFIGLVVSPLSRGCELELGSKGKVSIICETELFGHRISQQRRREK
QKQVSTDVLVKNLAELKVGQPIVHLEHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYV
PVSSLHLISRFSVGNDENTQLNKLGNETWAKAKKKAIERIRDVAAELLDVYARRQARPGE
ALALDEEEYAVFAQGFPYEETVDQESAIHAVLADLQAPMAMDRLVCGDVGFGKTEVAMRA
AFVAVNAGKQVIVLVPTTLLAQQHYENFTDRFADWPFVIEVMSRFRTTKEQNQVVQSLSE
GKVDIVIGTHKLLTAEAKFDNLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPR
TLNMAMSGMRDLSIIATPPAKRLAVKTFVREYDIATVREAILREILRGGQVYYLHNNVET
IEKAAQDIRDLLPEARVVTAHGQMRERDLERVMADFYHQRFNVLVCTTIIETGIDVPSAN
TILIHRADMFGLAQLHQLRGRVGRSHHQAYAYMMTPHPKRMTSDARKRLEAIDALEDLGA
GFLLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVKALKEGKEPSLAYMMNAI
CDIDLRIPALLPEDYVGDVNMRLSLYKRIANCDSETMIDELKVEFIDRFGMLPDPTRNLM
DITLYKHQATELGLQRIEMHSKGGSLEFGAEHRVDPMFIIGLLQKQPQIYRMDGPNKLKF
TIPAETSKDRLELLKTLLEQLAKHQTGEQ
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaatttagtgtaatcgctccgccaagtgttaaaaaaggccaacaacagcaagtt
ttaaccacccttggcggcgtatcccaagcgctcactgtcgcaaatttaattaaccagcat
tcaggcactagcttgattgtcacccatgacaccccaagtgcactgaccttagaagccgaa
ctcagctatcttttggccaatactggtgtcaatgtgtgtttatttcctgacagagaaacc
ctgccctacgacagtttctcaccgcatcaagacttaatctcgcagcgcttagaatcactg
gcgcagatcagccaaagtaatcataacgtggtgattgtgccggtaaacaccttgatggtg
cgactcccgccaaaatcatttttaaccgccaacgtgatgattttgaaaaaaggcgacata
tatagccttgatcaagttcgtcagcatcttacagataccggctaccatattgttgatcaa
gtctatgagcacggtgagtttgccattcgtggttcgattattgatattttccctacgggt
tccaaacagccactgcgtattgaactgtttgacgatgaagtcgaaaccatccgctttttt
gatgttgatacccaacgttcaggcatggcacttgagcaaattagaatgctgcccgcgaaa
gagtttcctacagacagtgctgcaattgaaggctttaggctgcgatatcgtcgccgtttt
gaagtgatttctaaagaagccgaatcagtgtatcaatcggtgagtcgtaatattatgcct
gcgggcatagaaaactatttgccgctgttttttgatgaatcatctagcttatttgattac
ctgccagaacaaagccagcttattaccttgggtgacattgataaagcctgcgagcatcat
ttacaggaagtgcacagccgttatgaagatcgccgcgttgatccattaaggcccctatta
gaacccaaagagctttacctgctagcggaccaactgtttgcggcatttaaacctatgccc
cgcagccaagtcattaatgcagtgtttgatgagcaaggtcaaattaatccagattcacag
ccaaaacatgcgctacttgctaaggcaaatagcattagtgatatcaatgccaatcacaaa
ctcaaacagcctttattagcactacaggaatacagtcaacagcatccgcaaatgctattt
gtggctgaatctgaaggtcgacgtgaagctttgattgaattgctggcaaaaattggtatt
aaaccaaaactgtttaagcacattgatgactatgtcaccgccaaagagtttatcggttta
gtggtatctccgctttctcgcggatgtgagttagagctaggatctaaaggtaaagtcagc
attatttgtgaaaccgaattattcggtcatcgtatttcacaacagcgtcgacgtgagaag
caaaaacaagtcagtactgatgtgttggttaaaaacttagctgaattaaaagttggtcaa
cctatagtgcatttagaacatggtgttgcactgtatcaaggattagaaaccttagacacg
ggcggtttagtcgctgagtatttaaaacttgagtacgctggcggtgataaactttatgtg
cctgtatcctcactgcatttaatcagccgctttagcgtgggcaatgatgaaaacacccaa
ctaaataagctaggcaacgaaacttgggccaaagccaagaaaaaagccattgaacgtatt
cgtgatgttgccgctgaattactcgatgtttatgcccgtcgtcaagctcgcccaggtgaa
gccttggcacttgatgaagaagaatacgccgtatttgcccaaggtttcccctatgaagaa
accgttgaccaagaaagcgcgattcatgcggtattagcagatttacaagcacctatggcg
atggaccgtttagtgtgtggcgatgtgggctttggtaaaacagaagtggctatgcgcgca
gcctttgttgccgtcaatgccggaaaacaagtcatcgtattagtacccaccaccttgtta
gcacagcagcactatgaaaactttactgaccgctttgctgattggccattcgtaattgaa
gtgatgtcacgttttagaaccactaaagagcaaaatcaagtggtgcagtcattaagtgaa
ggcaaagtggatatcgttattggtacccataagctgctcacagcagaggctaagtttgat
aacctcggcctactgattattgatgaagaacatcgctttggcgtgcgtcaaaaagaaaaa
attaaagccttacgtgccaatatcgatattctgaccttaaccgccacgcctattccgcgc
accttgaatatggccatgtcgggtatgcgagatttatcgattattgctacgccaccagca
aaacgtttagcggtgaaaacatttgtgcgcgagtacgatattgccacagtacgagaagcc
attttgcgtgaaattttacgcggtggccaagtgtattatttacataataatgtcgaaacc
attgaaaaagcggcccaggatattcgcgacctgttaccagaagccagagtcgtaaccgcc
catggccaaatgcgcgaacgcgatttagaaagagtgatggctgacttttatcatcaacgt
tttaacgtactggtatgtaccactattatcgaaaccggcattgacgtgcctagcgccaat
actattttgatacacagggctgacatgtttggtttagcccagttacatcaattacggggc
cgagtgggccgttcacatcatcaagcttacgcctatatgatgacaccgcacccaaaacgt
atgacctcagatgcgcgtaaacgtttagaggccattgatgccctggaagatctgggcgca
ggatttttgttagccacccaagatttagaaatccgtggagcaggtgaattactcggtgat
gagcaaagcggacatatcagtaaaattggttttagtttgtacatggaaatgctcgaatca
gccgtcaaagcgcttaaggaaggcaaagagccgtcattagcctatatgatgaatgcgatt
tgtgacattgacttacgtattccagccttgctacctgaggattatgttggtgacgtcaat
atgcgtttatcactatacaagcgaattgccaattgtgactctgaaaccatgattgatgaa
cttaaagtcgagtttattgaccgttttggtatgctacccgatccaacccgtaacttgatg
gacattaccttatataaacaccaggcaacagagctagggctgcaacgtattgagatgcac
tcaaaaggtggcagcttagaatttggagcggaacatagggtcgatccgatgtttatcatc
ggtttattacaaaagcagccacaaatctatcgaatggatgggccaaataagttaaagttc
accattccagctgaaaccagtaaagacaggctcgaattattaaagactttacttgaacag
cttgctaaacatcaaactggagagcagtag
DBGET
integrated database retrieval system
