Streptomyces gobiensis: test1122_21455
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Entry
test1122_21455 CDS
T08145
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sgob
Streptomyces gobiensis
Pathway
sgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
test1122_21455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgob03019
]
test1122_21455
03400 DNA repair and recombination proteins [BR:
sgob03400
]
test1122_21455
Enzymes [BR:
sgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
test1122_21455
Messenger RNA biogenesis [BR:
sgob03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
test1122_21455
DNA repair and recombination proteins [BR:
sgob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
test1122_21455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
RecQ_Zn_bind
Pribosyltran
Motif
Other DBs
NCBI-ProteinID:
UGY94027
LinkDB
All DBs
Position
complement(4604238..4606409)
Genome browser
AA seq
723 aa
AA seq
DB search
MTANELRAAADTVLARLVGDGTGAARLRTDQWRAIEALVADRRRALVVQRTGWGKSAVYF
VATALLRERGSGPTVIVSPLLALMRNQIEAAGRAGIRARTINSANTEEWETVRAEVAAGE
VDLLLVSPERLNNPDFRDQVLPELAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLAEL
KPGVPVLATTATANARVTADVAEQLGTGTGAQSTEALVLRGPLDRESLSLSVLRLPDAAH
RLAWLDGHLEGLPGSGIIYTLTVAMAEEVTAYLRQRGHVVTSYSGRTENADREAAEADLL
ANRVKALVATSALGMGFDKPDLGFVVHLGSPSSPISYYQQVGRAGRGVDHAEVLLLPGPE
DESIWRYFASLAFPPEEQVRRTLEVLSAAGRPVSLPALEPQVELRRSRLEMMLKVLDVDG
AVRRVRGGWTATGQPWSYDTERYAWVASQREAERQAMRDYTTASGCRMEFLRQQLDDPQA
APCGRCDNCAGARFTTEVTPDSLAAATGELSRPGVEVEPRRMWPTGLPAIGVDLKGRIPP
GQQSAPGRALGRLSDIGWGNRLRPLLAPQADDGPVPDDVVQAVVTVLADWAKGPGGWASG
QQGAPDRPVGVVTVSSGARPKLVQSLGERIAAIGRMPLLGTVVRTEDGPGGALPRSNSAQ
RVRALHQTLAVPPPLAEALVNAGGPVLLVDDFTDTGWTLAMVARLLRQSGAKDVLPLVLA
VQG
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atgactgccaatgagctgcgcgccgccgccgacactgtcctggcccgtctcgtgggtgac
ggcaccggtgcggcccggctgcggacggaccagtggcgggccatcgaggcgctggtcgcc
gaccggcggcgggcactggtggtgcagcgcaccggctggggcaagtccgcggtgtacttc
gtcgcgaccgcgctgctccgggagcgcggcagtggcccgactgtcatcgtctctccgctg
ctggcgctcatgcgcaaccagatcgaggcggccgggcgtgcgggcatccgggcccgcacg
atcaactccgccaataccgaggagtgggagacggttcgggcggaggtggcggcgggcgag
gtcgacctcctcctggtgagcccggagcggttgaacaatccggacttccgcgatcaggtg
ctgcccgaacttgcggcggcgaccgggctgctcgtggtcgacgaggcgcactgcatttca
gactggggccatgacttccggccggactaccggcggctgcggacgatgctggctgagctg
aaacccggggtgccggtgctggccacgaccgcgaccgccaatgcccgggtcaccgccgat
gtcgccgagcagctcggcacgggcacgggtgcgcagtccacggaggcgttggtgctgcgc
ggtccactggaccgggaaagcctcagcctgtcggtgctgcggctgccggacgcggcacac
cggctcgcctggctcgacggtcatctggaagggctgcctggctcggggatcatctacacc
ctcacggtcgcgatggcggaggaggtcacggcctatctgcggcagcgcgggcacgtggtc
acctcctactcggggcggacggagaacgccgaccgggaggccgccgaggcggatctcctg
gcgaaccgggtgaaggcgctggtggcgacctcggctctgggcatgggcttcgacaagccg
gatctcggttttgtggtgcatctcggctcgccgtcctcccccatctcctactaccagcag
gtcggccgtgcagggcgcggtgtggaccatgcggaggtgctgctgctcccgggcccggag
gacgaatcgatctggcggtacttcgcctcgctggcgttcccgcccgaggagcaggtgcgc
cgcaccctcgaggtgctctcggccgccggccgcccggtatcgctgcctgcgctggagccc
caggttgagctgcgcagatcccggctggagatgatgctcaaggtgctcgatgtggacggc
gccgtgcggcgggtgcgcggcggctggaccgccaccggccagccgtggtcctacgacacc
gagcggtacgcctgggtggccagccaacgggaggcggagcggcaggcgatgcgggactac
accaccgcgagcggctgccggatggagttcctgcgccagcagctggacgaccctcaggcg
gcaccctgcggccggtgcgacaactgcgcgggagcccgcttcaccactgaggtcaccccg
gattcgctggcggcggccaccggagagctgtcgcgcccgggagttgaggtggagccgcga
cggatgtggccgaccgggctgcccgcaataggggtggacctcaagggccgtattccaccc
ggccagcagtcggcgcccggccgggcactggggcgcctctcggacatcggctggggcaac
cggctgcgcccgctgctcgctccgcaggcggacgatgggccggtgccggacgatgtggta
caggcggtggtgacggttctcgccgactgggcgaagggccccggcggttgggcatccggc
cagcagggcgcaccggaccgccccgtgggagtggtgaccgtcagctccggcgcccggccg
aagctggtccagtcgctcggcgagcggatcgcggccatcgggcggatgcccctgctgggg
accgtggtgcgtacggaggatggcccggggggagcgctgccgcgcagcaacagcgcacag
cgggtgcgggcgctgcatcagacgctcgcggtgccgccacccctcgccgaggcgctggtg
aacgccggtggtccggtactgctggtggacgacttcaccgatacgggctggaccctggcc
atggtggcgcggctgctgcgtcagtcgggagccaaggacgtactgccgctggtcctcgcc
gtgcaggggtga
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