Streptomyces gobiensis: test1122_24615
Help
Entry
test1122_24615 CDS
T08145
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
sgob
Streptomyces gobiensis
Pathway
sgob03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sgob00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
test1122_24615 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgob03400
]
test1122_24615 (ligD)
Enzymes [BR:
sgob01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
test1122_24615 (ligD)
DNA repair and recombination proteins [BR:
sgob03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
test1122_24615 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UGY94600
LinkDB
All DBs
Position
complement(5288209..5289120)
Genome browser
AA seq
303 aa
AA seq
DB search
MKLSFGEYEIEVGNADKIFFPEAGISKGELVEYYAKVAETILPYLEGRPVSMKRYPDGIE
GKSFYQKEVPDHFPDWIERARVSVQRGNGVVHHAVIRRAADLAYLTDQACVTPHVWLSTT
DHLNRPDRMIFDLDPTSDDLGVVRDAAQAIRDVLKELGLASYVMTSGSRGYHVWVPLDAE
EDFDAVRDIARGIAEAVVARDPESFTVEQRKDQRGDRLLIDYLRNAYGQTSVPPYAVRAR
PGAPVATPLGWDELGTGPRDYTIGNVLRRLGQKEDPWKEMPRSARPLAEPRQRLDALLSD
QDG
NT seq
912 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctctcattcggtgagtacgagatcgaggtcggtaacgccgataagatcttcttc
cccgaggccgggatctccaagggcgaactggtcgagtactacgccaaggtcgccgaaacg
atactcccgtacctcgagggccgcccggtctcgatgaagcgctatcccgacggtatcgag
ggaaagagcttctaccagaaggaagtgcccgatcacttccccgactggattgaacgcgct
cgcgtgtccgtgcagcgaggcaacggcgtggtgcaccacgcggtgatccgccgcgcggca
gaccttgcctatctcacagatcaggcctgcgtcacccctcatgtgtggctgtccaccacc
gaccacctcaaccggcccgaccggatgatcttcgacctcgaccccacctccgacgacctg
ggggtggtcagggacgcagcccaggccatccgggacgtgctcaaggagctggggctggcc
tcctacgtcatgaccagcggttcccgggggtaccacgtgtgggtccccctcgacgcggaa
gaggacttcgacgcggtacgggacatcgcccggggtatcgctgaagcggtggtggcccgc
gacccggagtcgttcaccgtggagcagcgcaaggaccagcgaggggaccggctgctgatc
gactatctgcggaatgcctatgggcagacctccgtgccgccgtacgcggtacgggcccgg
ccaggggcaccggtcgccaccccgctgggctgggacgagctcgggactggtccccgggac
tacaccatcggcaatgtgttgcgtcgcctggggcagaaggaagacccctggaaggagatg
ccgcggtccgcccggccgctggccgaacccaggcagcgccttgatgccctcctcagcgac
caggacggctga
DBGET
integrated database retrieval system
