Scandinavium goeteborgense: A8O29_009495
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Entry
A8O29_009495 CDS
T06630
Symbol
rnd
Name
(Genbank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
sgoe
Scandinavium goeteborgense
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sgoe03016
]
A8O29_009495 (rnd)
Enzymes [BR:
sgoe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
A8O29_009495 (rnd)
Transfer RNA biogenesis [BR:
sgoe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A8O29_009495 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
QKN81502
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All DBs
Position
1821142..1822260
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AA seq
372 aa
AA seq
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MITEDAALKAACDEARNAPAIALDTEFVRTRTYYPQLGLIQMFDGETVVLIDPLAITDWR
PFKELMLNKNVTKYLHAGSEDLEVFLNTFGKLPEPLIDTQILAAFCGRPMSWGFAAMVEE
FTGIAIDKSESRTDWLARPLTERQCDYAAADVWYLLPIAIKLLAETDTSGWLPAALDECR
LMQQRRQEVVDPAEAWRDITNAWQLRTRQLACLKLLAEWRLRKARDRDMAVNFVVREEHL
WAVARYMPGSMGELDSLGLSGSEIRFHGKTLLSLVEKAKELPDDALPEPLLNLMDMPGYR
TLFKEIKALVQEVSKEKGVSVELMASRRQINQLLNWHWQLKPQSGLPELVSGWRGEMMAE
SLKALLEKYPRV
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgatcaccgaggacgctgcgctcaaggccgcctgtgacgaggcccgcaacgcgcctgcc
attgcgctggacaccgaatttgtccgtacccgaacctattacccgcagttgggcctgatc
cagatgttcgatggcgaaacggtggtgctgattgaccccctggccatcaccgactggcgt
ccattcaaagagctgatgctcaacaaaaatgtcaccaaatatttgcatgcgggcagtgaa
gatctcgaagtgtttctcaacaccttcggcaagttgcccgagccgctcatcgacacgcaa
attctggctgccttctgcggtcgcccgatgtcatggggctttgcggcgatggtcgaggaa
tttaccggcattgctatcgacaaaagtgaatcccgtactgactggctggcgcgcccactg
acggaacgtcagtgcgactatgcggcggcggatgtctggtatctgctgccgatcgccatc
aaactgctggccgaaacggataccagcggctggctgcctgcggcgctggacgaatgccgt
ctgatgcagcagcgtcgtcaggaagtggttgacccggcagaagcctggcgcgatatcacc
aacgcctggcagctgcgtacgcgtcagttagcgtgcctgaagctgctggcggaatggcgc
ttgcgcaaagcgcgcgatcgcgacatggcggtgaatttcgtggtgcgtgaagagcatctg
tgggccgtggcgcgatacatgccgggcagcatgggtgaactcgacagcctcgggctttcg
ggcagcgaaatccgtttccacggtaaaacgctgttgagcctggtcgaaaaagccaaagaa
ttgccggatgacgcattgccggagccgctgctgaacctgatggacatgccgggttaccgt
acgctgttcaaagagattaaagcgctggtgcaggaagtgagcaaagagaagggcgtcagc
gtcgagctgatggcgtctcgtcgtcagattaaccagttgcttaactggcactggcagctg
aaaccgcagagcggattaccggaactggtatccggctggcgcggcgaaatgatggccgag
agcctgaaagcgttgctggaaaagtatccgcgagtataa
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