Streptomyces griseus: SGR_4422
Help
Entry
SGR_4422 CDS
T00691
Name
(GenBank) putative transcriptional-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgr
Streptomyces griseus
Pathway
sgr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SGR_4422
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgr03400
]
SGR_4422
Enzymes [BR:
sgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGR_4422
DNA repair and recombination proteins [BR:
sgr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SGR_4422
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
4HBT_3
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAG21251
Kitasato:
SGR4422
UniProt:
B1VUM5
LinkDB
All DBs
Position
5168520..5172053
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDVVVTDPALAEAVKAAGDGHRAHVDLVGPPGARPFAVAALARQTGRTVLAVTA
TGREAEDLAAALRTLLPPDTIAEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRADDP
ETGPVSVVVAPIRSVLQPQVKGLGELEPVALAGGQSADLGEVVDALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDEVEEIRYFKIADQRSLEVAAHGLWAPPCRELL
LTDEVRERAAALAEAHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVLPEDAMAI
VCDPERVRTRAADLVATSQEFLQASWAASAGGGEAPIDVGAASLWGIADVRDRARELDMM
WWSISPFAADAADHDEDTLQLSMHAPEAYRGDTARALADTKGWLADGWRTVYVTEGQGLA
NRTVEVLSGEGIAARLTPDLTEVTPSLVHVSCGAIEQGFVDPALKLAVLTETDLTGQRTA
TKDLGRMPARRRKTIDPLTLEVGDYIVHEQHGVGRYVEMVQRTVQGATREYLLVEYAPAK
RGQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKQRAKKAVKEIAADLIKLYS
ARMAAPGHAFGADTPWQRELEDAFPYAETPDQLSTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHYGTFTERYSQFPVNVRALSRFQSETESR
ATLEGLRDGAVDLVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVF
YIHNRVESIDRAAARLREIVPEARIATAHGQMSEAALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDNFGLSQLHQLRGRVGRGRDRGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRAQMEGG
VEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASASSEDDIRAVREELTDRYGPL
PEPVENLLLVAGLRMLARACGVGEIVLQGSNIRFAPVELRESQELRLKRLHPKTVIKPAA
HQILVPRPTTGKIGGKPVIGRELLAWTGEFLTTILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggatgtcgtcgttacggacccggcgctcgccgaggcggtg
aaggccgccggggacgggcaccgggcccacgtcgacctggtgggcccgcccggtgcgcgg
ccgttcgccgtggcggcgctggcccggcagaccggccgcaccgtgctggccgtcaccgcg
acgggccgggaggccgaggacctggccgccgcgctgcgcacgctgctgccgccggacacg
atcgcggagtacccgtcctgggagaccctgccgcacgaacggctctcgccccgctcggac
accgtgggccgccgcctcgcggtgctgcggcggctcgcccacccgcgcgcggacgacccg
gagaccggcccggtctccgtcgtcgtcgcgccgatccgctccgtgctccagccacaggtc
aaggggctcggcgagctggagccggtggccctggccggcgggcagagcgcggatctgggg
gaggtggtggacgcactggcggccgccgcgtactcccgggtcgaactggtcgagaagcgc
ggcgagttcgccgtgcgcggcgggatcctcgacgtcttcccgccgaccgaggagcacccc
ctgcgggtggagttctggggcgacgaggtcgaggagatccgctacttcaagatcgccgac
cagcggtccctggaggtcgccgcgcacgggctctgggcgccgccctgccgcgagctgctg
ctgaccgacgaggtgcgggagcgggcggcggccctcgccgaggcccacccggagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtccctggccccg
gtcctggtcgacgagatggagctgctgctcgacgtgctgcccgaggacgcgatggcgatc
gtctgcgacccggagcgggtgcggacgcgggcggccgacctggtcgccacgagccaggag
ttcctccaggcgtcgtgggcggcgagcgcgggcggcggcgaggcccccatcgacgtgggc
gcggcctcgctgtggggcatcgcggacgtccgggaccgggcccgcgagctggacatgatg
tggtggtcgatctcgccgttcgcggccgacgccgccgaccacgacgaggacaccctccag
ctctccatgcacgcccccgaggcgtaccggggcgacaccgcgcgggcgctcgccgacacc
aagggctggctggccgacggctggcgcacggtgtacgtgacggagggccagggcctcgcc
aaccgtacggtcgaggtgctgagcggcgagggcatcgcggcccggctcaccccggacctc
accgaggtcaccccctccctggtgcacgtctcctgcggggccatcgagcagggcttcgtc
gacccggcgctgaagctcgccgtgctcaccgagacggacctgaccggccagcgcaccgcc
accaaggacctgggccggatgccggcccgccgcaggaagacgatcgacccgctgacgctg
gaggtcggcgactacatcgtccacgagcagcacggtgtgggccggtacgtggagatggtg
cagcgcacggtccagggcgcgacccgcgaatacctcctcgtcgagtacgcccccgccaag
cgcggccagccgggcgaccgcctctacatcccgaccgaccagctggagcaggtcaccaag
tacgtcggcggcgaggccccgacgctgcaccggctcggcggcgcggactggacgaagacg
aagcagcgggcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctctactcc
gcccggatggcggcccccggccacgccttcggcgcggacaccccctggcagcgggagctg
gaggacgccttcccgtacgcggagacgcccgaccagctgtccacgatcgccgaggtcaag
gaggacatggagaagacggtcccgatggaccggctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgggccgcgttcaaggcggtccaggacggcaagcaggtggcg
gtcctggtcccgacgaccctgctggtccagcagcactacggcaccttcaccgagcgctac
tcccagttcccggtcaacgtgagggcgctgagccgcttccagtcggagacggaatccaga
gcgaccctcgaaggcctcagggacggtgccgtcgacctggtcatcggcacccaccgcctc
ttctcctccgagacgaagttcaaggacctcggcctggtcatcgtggacgaggagcagcgg
ttcggcgtcgagcacaaggagcagctgaagaagctccgcgccaacgtggacgtgctcacg
atgtccgcgacccccatcccccgtacgctcgaaatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcgccacccggtcctcaccttcgtcggcccgtac
gaggagaagcagatcggcgcggcggtccgccgcgaactcctgcgcgagggccaggtcttc
tacatccacaaccgggtcgagtccatcgaccgggccgccgcccgcctccgcgagatcgtc
ccggaggccaggatcgccacggcccacggccagatgtcggaggccgccctggagcaggtg
gtggtggacttctgggagaagaagttcgacgtcctggtctccacgacgatcgtcgagtcc
ggcatcgacatctccaacgcgaacaccctgatcgtggagcgcggggacaacttcggcctc
tcccaactccaccagctgcgcggccgggtgggccggggccgcgaccgggggtacgcctac
ttcctctacccgcccgagaagcccctgaccgagacggcccacgaacgcctggccaccatc
gcccagcacacggagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctcggcggcgagcagtccggccacatcgcgggcgtcggcttcgac
ctgtacgtccgcatggtcggcgaggccgtggccgactaccgggcccagatggagggcggc
gtcgaggaggagcccccgctggaggtcaagatcgagctcccggtcgacgcgcacgtcccg
cacgactacgcccccggcgagcggctgcgcctccaggcgtaccgcgcgatcgcctcggcc
tcctcggaggacgacatccgcgcggtccgcgaggagctcaccgaccgctacggcccgctg
cccgaaccggtcgagaacctcctcctggtcgcgggcctgcgcatgctggcccgcgcctgc
ggagtcggcgagatcgtcctccagggctccaacatccgcttcgcgccggtggagctgcgc
gagtcccaggagctgcgcctgaagcgcctgcaccccaagacggtcatcaagccggccgcc
caccagatcctggtcccgcgcccgacgaccggcaagatcggcggcaagccggtcatcggc
cgcgaactgctggcgtggacgggggagttcctgacgacgatcctggggtcgtag
DBGET
integrated database retrieval system
