Sporisorium graminicola: EX895_000467 Help Entry EX895_000467      CDS       T09331                                  Name (RefSeq) hypothetical protein   KO K14326   regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3] Organism sgra  Sporisorium graminicola Pathway sgra03013   Nucleocytoplasmic transport sgra03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:sgra00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     EX895_000467    03015 mRNA surveillance pathway     EX895_000467  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:sgra03019]     EX895_000467 Enzymes [BR:sgra01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      EX895_000467     5.6.2.5  RNA 5'-3' helicase      EX895_000467 Messenger RNA biogenesis [BR:sgra03019]  Eukaryotic type   mRNA surveillance and transport factors    Surveillance factors     Surveillance complex      EX895_000467    mRNA cycle factors     Common to processing body (P body) and stress granule      EX895_000467 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase Viral_helicase1 DEAD Helicase_RecD nSTAND3 Ribosomal_S13_N AAA_22 SRP54 ATPase AAA_16 PhoH AAA AAA_10 Motif Other DBs NCBI-GeneID:  40723362 NCBI-ProteinID:  XP_029742454 LinkDB All DBs Position SGRAM_1:1217676..1220963 Genome browser AA seq 1095 aa AA seqDB search MSEHYSFDHFDGASNYDATSPEYSYADLSSHSSNHANGHKHAKSSSNLRRKDLDLDLDLD AISDLHLTDRNLDPSRSHVHPHLGPHPKTDSASHAHLMHDNLHGGTTRLYDAGIGDDVDQ TLLQNLPEHACAYCGIFNPSCVVKCLICNKWFCNSRGSTSGSHIVNHLVRAKHKEVCLHA ESPLGETTPECYNCGAKNVFLLGFIPAKSETVVVLLCRQPCAAMSNSKDIIWDTTQWSPL IEDRCFLTWLVKVPSEHEQLRARPVTLHQINRLEELWKDNASASLEDLDKPGVEEEPNSV LLRYEDAYQYQNIFGPLVKMEADYDRKLKESQTQQDLVVRWDQGLNQKKIAFMTLPKLES GEVRLAVGDELKLRYRGELAPPWEGVGHVIKIPNNVSDEVALELKRADGVPDHCTHNFFA DFVWKATSFDRMQSAMKTFAVDEQSLSAYIYHKLLGHEIENSTLRTTMPKRFSAPGLPEL NHSQVNAVKSVLQKPLSLIQGPPGTGKTVTSASIVYQLSKMNPGPVLVCAPSNVAVDQLT EKIHMTGLKVVRLTAKSREALESPISFLTLHEQVANNDTNIELQKLIQLKNEQGELSSSD ERKCKALIRACEKEILSTADVICCTCVGCGDPRLAKIKFRTVLVDEATQAAEPECMIPLV MGCKQVVFVGDHLQLGPVIMNKKVARAGASQSLFERLIMLGNRPIRLQVQYRMHPCLSEF PSNMFYEGTLQNGVTAPERLRKDVDFPWPVPSLPMLFFQNLGQEEISSSGTSFLNRTEAS NVEKIVTRFFKAGVKPSQIGIVTPYEGQRSYVVNHMQLHGSLKKELYKEVEVASVDAFQG REKDYIILSCVRSNEHQGIGFLSDPRRLNVALTRARFGLVILGNPKVLNKHPLWHYLLVH YKEKGCLVEGVLSNLQPSMMQFPKPRRPLQKPGDLMARHRHDLVGGVDGYGASRGGRLPE AGGKGESNELGFFRTHDPMSYIPSDAQSVTSLGTQATYPSAHLSVGGTHGPYASSIVSQD VDTESLAGSTAPSASITYSQSDRLHRRLSLSSLGGASDLTSLDNYKGDGSYFGGQDDDAV STFSAAISQSSFTTF NT seq 3288 nt NT seq  +upstreamnt  +downstreamnt atgtccgagcactacagctttgaccacttcgacggtgcatccaactacgatgcaaccagc cccgagtactcctatgcagacctcagctctcactcttccaatcacgccaatggtcacaaa catgcgaagtccagttccaacctgcgtcgcaaagatctcgacctcgacctagacctggat gccattagcgacctccacctcaccgaccgcaatctcgacccttcccgctcccatgttcac ccgcaccttggcccacatcccaagaccgatagcgcttctcatgcgcacctcatgcacgac aatctccacggcggcaccactcgcctttacgacgcaggtatcggcgacgatgtggaccag acattgctccaaaacttgcccgagcatgcttgcgcctattgcggcatctttaatccatcc tgcgtagtcaagtgtctcatctgcaacaagtggttttgcaactcgcgcggatctacttcc ggttctcacatcgtcaaccacctcgtccgcgcaaaacacaaggaagtctgcctccacgcc gagtcgcctctcggcgagacaacgcccgaatgctacaactgcggtgccaagaacgtcttt cttctcggctttattccagcaaagagcgagaccgtcgtggtcctgctctgccgccagcct tgtgccgccatgtccaactccaaagacatcatctgggataccacacagtggtctccgctt atcgaagaccgatgcttcctcacttggctcgtcaaggtgccctccgaacacgagcagctg cgagcgcggcccgtcaccttgcaccagatcaaccgtctcgaagagctttggaaggataat gcaagcgcaagccttgaggatctcgacaagcccggcgtcgaggaagaacccaacagcgtt ctcctccgatacgaagatgcctaccagtatcaaaatatctttggacctctggtcaagatg gaggccgactacgatcgcaagctcaaagagtcacagacccagcaggacctggtggttcgc tgggaccagggtctcaaccagaaaaagatcgcctttatgacactccctaaactcgagagc ggcgaggtgcgtctggccgtcggtgacgagctaaagcttcgctatcgaggcgagctcgct cctccctgggaaggcgtcggacacgtcatcaagatccccaacaacgtctcggacgaggtg gcgctcgagctcaagagggccgatggcgtccccgaccactgcacgcacaatttctttgcc gattttgtctggaaggccacctcgtttgatcgcatgcagagcgccatgaagacgttcgcc gtcgacgaacagagtctcagtgcttacatctaccacaagctgctcggccacgagatcgaa aattcgacgcttcgaaccaccatgcccaaacgcttcagtgctcccggcctgcccgagctc aaccacagtcaagtcaatgcagtcaagagtgtcctgcagaagccgctcagtctcattcag ggtcctccgggcaccggtaagaccgtcacttccgcctcgatcgtctaccagctcagcaag atgaaccccggtcctgtgctggtgtgtgccccctcaaacgtcgctgtggaccagctcacc gaaaagattcacatgaccggcctcaaggtggtgcgtctcaccgcaaagagtcgagaggcg ctcgagagtcccataagctttctcaccctccacgagcaggtcgccaacaacgacaccaac atcgagctgcaaaagctcatccagctgaaaaacgaacagggcgagctcagcagcagcgac gagcgaaaatgcaaggccctcatccgtgcctgcgaaaaggagatcctcagcaccgccgac gtgatctgctgtacctgtgtcggatgcggagatccacgcttggccaagatcaagttccgc accgtgctcgtcgatgaggcgacgcaggccgccgagcctgagtgcatgatcccgctcgtc atgggctgcaagcaagtcgtgttcgtcggagaccacctgcagcttggacctgtcatcatg aacaagaaggtggctcgtgcaggtgccagtcagagtctgttcgagcggctcattatgctc ggcaatcgacctattcgactgcaagtgcagtaccgcatgcacccttgtctctccgagttt ccttccaacatgttttacgagggcaccctgcagaacggtgtcactgcaccggaacgactg cgcaaagatgttgacttcccctggcccgtgccgtcgctgcccatgctcttcttccagaat ctgggccaagaggagatctcgagcagcggcacttcctttcttaaccgcaccgaggcgtcc aacgtcgaaaagattgtaacgcgtttcttcaaagccggcgtcaagccatcgcagatcggc atcgtgacgccctacgagggccaaaggagctacgtcgtcaatcacatgcagctgcatgga tccctcaaaaaggagctgtacaaggaagtcgaagtggccagcgtcgatgccttccagggc cgagaaaaggactacatcatcctcagctgcgtgcgcagcaacgagcaccaaggtattgga ttcttgagcgatccgcgacgtctcaatgtggcgctcacccgagctcgattcggtttagtg atcctcggcaacccgaaggtgctcaacaagcatcccctgtggcactacctgctcgtccac tacaaggagaaaggatgcctggttgaaggcgtgctgtccaacttgcagccgagcatgatg cagttccccaagccgcgtcgaccgttgcaaaagcctggcgatctcatggcgcgacaccgt cacgatctggtaggaggcgtcgacggctacggtgcgtctcgtggcggccgactgcccgag gctggtggcaagggagaatcaaacgagctcggtttcttccgcacgcacgatcccatgtcg tacattccgagcgatgcgcagagcgtcacgagcttgggcacgcaggctacgtatccgtca gcgcacctgtcggtgggtggtacacatggaccgtacgccagcagcattgtgagccaagac gtcgacacggagagcctggccggaagcactgcgccgtcggcaagcatcacgtacagccag agcgatcggctgcaccgccggctgagcctgagcagtctaggaggtgcttcggatctgaca agccttgataactacaagggcgacggaagctattttggagggcaggacgacgatgcagta tccacgttttcggcggccatctcgcagtcatcgttcaccacgttttga

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