Sporisorium graminicola: EX895_004676
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Entry
EX895_004676 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
sgra
Sporisorium graminicola
Pathway
sgra03022
Basal transcription factors
sgra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
EX895_004676
09124 Replication and repair
03420 Nucleotide excision repair
EX895_004676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sgra03021
]
EX895_004676
03400 DNA repair and recombination proteins [BR:
sgra03400
]
EX895_004676
Transcription machinery [BR:
sgra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
EX895_004676
DNA repair and recombination proteins [BR:
sgra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
EX895_004676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
40727571
NCBI-ProteinID:
XP_029738512
LinkDB
All DBs
Position
SGRAM_4:complement(592071..593546)
Genome browser
AA seq
491 aa
AA seq
DB search
MATPRHTPGPGQGVTSTARGGTNSALSISEHSRAAGIGAETIDDFLDRQPRSVLIRLYDK
PASCLAIFRLLPMMARQLIMHMLFLDVPLAADDFLAWIKKEARKDFDAAVDKLSRLSIVQ
LKATAGKQILLLNAVFTDGMRRALTGGGKHRSFGVPCDTEDKNAVDVAFLDEYARTKWET
ILHYMVGSDNSSTPREPVLYLLRRSNLMQPRSNSSSGGGLNITSRGFQFLLEDVNTQLWD
LLLQYLDMAEERNMDLVEVLAFLFMLGSLELGRDYSTEELPETQLHMLEDFRDYGLVYQR
KASSRRFYPTRLATTLTSSAAVPLLSSNGTEQEERGYIILETNYRLYAYTSNRLRVAVLS
LFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYLTHHAHLQMHRNDPLLPVTVSD
QIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVRNYAKQLGVLVWEDEAKRRFFVDEAGNE
PVRDYIRRRRA
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atggcgactccaagacacacaccggggccaggccaaggagtcacttccaccgctagagga
ggcaccaacagcgctctctcaatatccgagcactcaagagcagctggtatcggtgctgag
accatcgacgactttctggatcgacagccgcgatcggtgctcatccgcctgtacgataaa
ccggcatcatgtcttgccatcttccgcctgctgcccatgatggcgcgccagctcatcatg
catatgctgttcctggatgtgccgctcgctgcagatgactttttggcatggataaaaaag
gaagccaggaaggactttgatgcagctgtcgacaagctctctcgtctgtcaatcgtacag
ctcaaggcaacggcaggcaagcagatcctgcttctcaacgctgtgtttacagacggtatg
cgaagagccttgaccggtggaggcaagcacaggtcctttggcgtaccctgcgataccgaa
gacaagaatgcggtagatgtggcattcctcgacgaatatgcgcgcacaaagtgggaaacc
attctgcactacatggtgggcagcgacaactcgagcactccacgcgaacccgtcctctac
ctgctgcgcaggagcaacctgatgcagcccagatccaactcgagctcgggcggcggtctt
aatattaccagccgtggattccaattcttgctcgaagacgtcaacacccagctatgggac
ctgctgctgcagtacctcgacatggccgaggagcgaaacatggatctggtcgaggtgctt
gcctttctcttcatgctcggcagtttggagctgggtcgggactactcaaccgaagagctt
cccgagacgcagctgcacatgctcgaagactttcgcgattacggtctcgtctaccagcgc
aaagcttccagtcgacgattctaccccacgcgccttgcgaccactctcacctcgtccgct
gctgtccccttgctatccagcaacggaacagaacaggaggagcgaggctacatcatcctc
gagaccaactaccgtctgtacgcctacacctcgaatcgtctgcgcgtcgccgtcctgtcg
ctgttcgtcaccatcaaggcacgcttccccaacttggtagtgggttccatcacacgcgac
tcggtcaagtcggctctcgcgaatggcatcaccgcggagcagatcatcacgtacctcacg
catcacgcgcatcttcagatgcatcgcaacgaccccttgcttccggtgaccgtgtcggac
cagatcaggttgtgggagcgcgaaaagaaccgcgtacagcagaatttgggttcgctgttt
acagatttcacgagtcaattcgactttgaggaggtcaggaactatgcaaagcagttggga
gtattggtgtgggaggacgaggcgaagaggaggttcttcgtggatgaagcgggtaacgag
cctgtacgtgattacattcgacgtagaagggcctag
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