Schistocerca gregaria (desert locust): 126281209
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Entry
126281209 CDS
T08688
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
sgre
Schistocerca gregaria (desert locust)
Pathway
sgre03013
Nucleocytoplasmic transport
sgre03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sgre00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126281209
03015 mRNA surveillance pathway
126281209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgre03019
]
126281209
Enzymes [BR:
sgre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126281209
5.6.2.5 RNA 5'-3' helicase
126281209
Messenger RNA biogenesis [BR:
sgre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126281209
mRNA cycle factors
Common to processing body (P body) and stress granule
126281209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
Helicase_RecD
AAA_16
nSTAND3
ATPase
SRP54
UvrD-helicase
AAA_22
AAA_32
AAA
Motif
Other DBs
NCBI-GeneID:
126281209
NCBI-ProteinID:
XP_049835903
LinkDB
All DBs
Position
7:165931673..166044953
Genome browser
AA seq
1122 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEDADLIGADTQGSEFDFTDFTLPSQSQTQASQLDVGHSQSTQ
NQLNGDIGENGLDADITATAKALGELQFEEEEDEAYYNKDLPEFACKYCGIHDPSCVVMC
NICKKWFCNGRGNTSGSHIINHLVRAKHKEVTLHKDGPLGETILECYSCGVRNVFVLGFI
PAKADSVVVLLCRQPCAAQNSLKDMNWDQEQWKPLIADRCFLTWLVKIPLEQEQLRARQI
TAQQINKLEELWKDNIDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADYD
KKLKESQTQENIEVRWDVGLNKKIIAYFTLAKTDGDMKLMHGDELRLRYLGEMHKPWSGV
GHVIKIPDNFGEEVGIELKNNSGAPTECSSHFVVDFIWKSTSFDRMQQALRKFAMDDSSV
SAYIYHRLLGHEVDEVLFRCHLPKHFSAPHLPDLNRSQVYAVKHAVQRPLSLIQGPPGTG
KTVTSATIVYHLVKQSGGSVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVS
FLALHKQIRIMDSNTELQKLQQLKDETGELSSVDEKRYRMLKKAAEKELLEAADVICCTC
VGAGDPRLQRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPFRLEVQYRMHPELSKFPSNFFYEGSLQNGVCADERKLTKIEF
PWPQPDKPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKITTRFLRCGVKPEQIGVITPYE
GQRAYLVQYMQYQGSLHAKLYQEIEVASVDAFQGREKDLIIMSCVRSNEHQGIGFLNDPR
RLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLNFYKEQKVLVEGPLNNLKESMIQFAKPK
KIVNTANPGTHFMSTSIYDAREALVPGSVYDRTSHLNGTPAPNHFFPRPTNGVPMDLYSR
THDPASYISPERAQAALANIPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRAATRNK
VKNTRNSVKTGLNQAGQSQDATQSYSQAAPLTQGMSQGMSQPGFSLSQPGLSQPELSQDS
YMVGEFQSQMDGLLSQDSTYQGDRSAFFTGGASQGGQFSQPY
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagcgttgacgcgtatggaccaagttcgcaaacgctaacatttttggacacggaagat
gctgaccttatcggtgctgatacccaaggttctgaattcgattttacagattttacgttg
ccttcacaaagtcaaacacaagcatcccagctggacgttggacacagccagtcaacacaa
aatcaactgaatggtgacattggggaaaatggtttggacgcagatatcacagcaacagca
aaagcactgggagaacttcagtttgaggaagaggaagatgaagcatattacaataaggac
cttccagaatttgcatgcaaatattgtggtatccatgaccctagttgtgtagtcatgtgc
aacatatgcaaaaaatggttttgcaatggacgaggaaacacatctggttctcatataata
aatcatcttgtgcgtgcaaaacataaggaagtgactctacataaggatggaccattagga
gagacgattctcgaatgctactcatgtggtgtaagaaatgtgtttgtactgggtttcata
cctgctaaagctgattctgtagtcgttttgctctgtcgacaaccatgtgctgcccagaat
tctctcaaagacatgaattgggaccaggaacagtggaaaccactgattgcagacagatgc
ttccttacatggctggtgaagatccctctggaacaagagcagttgcgtgcaagacagata
acagctcagcaaataaataagctagaggaactctggaaagacaatattgatgcaacattc
caagatttggagaaacctggtgtggatgaagaaccacaacaagttttattgagatatgaa
gatggctatcaatatcagaatatatttggacctcttgtcaagttggaagctgattatgac
aagaaactgaaagagtctcagacacaggagaatatagaagttagatgggatgttggcttg
aacaaaaaaataattgcatacttcacactggcaaaaactgatggtgacatgaaactcatg
catggtgatgaactgagactgcgttacttgggagagatgcataaaccgtggtctggtgtt
ggtcacgtcataaaaataccagacaactttggtgaagaagtgggtattgagttgaagaac
aacagtggtgcaccaactgaatgtagttcacattttgtcgtagatttcatttggaagtca
acttcatttgatagaatgcagcaggcactaagaaaatttgcgatggatgattcttccgtg
tctgcttacatttatcatcgcttacttgggcatgaagttgatgaagtgttatttcgttgc
catttgcctaaacatttttctgctccacatcttccagatctcaacagatcacaggtgtat
gctgtgaagcatgcagtccagcgcccattgtcgctgattcagggaccaccaggaactggc
aagactgtaacatcagcaactattgtttaccatctagtgaagcagagtggtggttcagta
cttgtttgtgctccttcaaacatagctgttgatcagttaactgagaagattcatcagacg
ggcctgaaagttgttcgtctctgtgcaaaatcgcgtgaagctattgattcccccgtctcc
ttccttgctttgcataaacagatacgaattatggacagcaataccgaactgcagaagcta
cagcagttgaaagatgagacaggtgaactgtcctccgtagatgagaaaaggtaccgcatg
ctgaagaaagctgctgagaaagagcttttggaggctgcagatgttatctgttgcacctgt
gtgggtgcaggtgacccacgcttacaacgcttgaaatttcattcaattcttattgatgaa
agtatgcaagcaacagaaccggagtgcatggttccagttgtactaggagcgaaacagcta
attcttgttggtgatcactgccagttgggcccagtggttatgtgcaaaaaagctgcacgt
gccggattgtcgcagtcattgtttgaacgtttggttgtattggggatccgcccattcagg
cttgaggtgcaatatagaatgcatccagaattatccaaatttccttcaaattttttctat
gaaggctcacttcagaatggagtgtgtgcagatgaacgtaaattgacaaaaattgaattt
ccatggccacagccagacaagccaatgtttttttatgtaactcaaggccaagaagaaatc
gcaggctctggaacatcatatttaaatcgcacagaagcagcaaatgttgaaaaaattaca
acaagatttttgaggtgtggagtcaagcctgagcagattggtgtcataacaccatatgag
ggacaacgggcgtacttggtgcagtacatgcagtatcagggctcattgcatgcaaagctc
taccaggaaatagaagttgctagtgtagacgctttccagggtagggaaaaggatctgatc
atcatgtcttgtgtgcgttcgaatgaacatcaaggaattggattcttaaatgacccaaga
agactgaatgttgcactcacacgtgcaaaatatgggattataatcgttggcaacccaaaa
gtgctatcaaagcaacctttgtggaaccacctgctgaatttttataaagaacagaaagtt
ctagttgaaggccccctaaacaatctaaaagaatcaatgatccaatttgcaaaaccaaag
aagatcgtaaatacagcaaaccctggaactcacttcatgtctacatcaatatatgatgcc
cgagaggcattggttccaggaagtgtgtatgatcgcactagccatttaaatggcacacca
gcacctaatcattttttccctagaccaacaaatggtgtaccaatggacttatacagccgc
actcatgatcctgcaagttatatatccccagaaagggctcaagctgcactagcaaatatt
ccagtaccggttggtatgttcatgaatatggcacatgttccaccacgattttacaaccag
catcagcaagctttgcaagcacgacaaaaccagagaaacagagcagcaacgaggaacaaa
gttaagaacacacgcaattctgtaaaaactggacttaatcaagcagggcagagtcaggat
gcaacacaatcttacagtcaagctgcaccactaactcaaggaatgtcacagggaatgtcg
caacctggatttagcctgtcacagccaggactttcccagcctgagttgtcacaggacagt
tatatggtgggagaattccagtcacaaatggatggactcctgtcacaggattcaacctac
caaggagaccgctcagcctttttcactggcggcgcttcacaaggaggacagttctcacag
ccatattga
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