Streptomyces graminofaciens: SGFS_038030
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Entry
SGFS_038030 CDS
T09325
Name
(GenBank) Ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SGFS_038030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgrf03019
]
SGFS_038030
Messenger RNA biogenesis [BR:
sgrf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SGFS_038030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
DUF1161
DUF1732
Motif
Other DBs
NCBI-ProteinID:
BBC32509
LinkDB
All DBs
Position
complement(4368632..4370317)
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AA seq
561 aa
AA seq
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MSHPHPELGPPPPLPEGGLRVTPLGGLGEIGRNMTVFEYGGRLLIVDCGVLFPEEEQPGI
DLILPDFSSVRDRLDDIEGIVLTHGHEDHIGAVPYLLREKPDIPLIGSKLTLALIEAKLQ
EHRIRPYTLEVVEGNRERIGPFDCEFVAVNHSIPDALAVAIRTPAGMVVHTGDFKMDQLP
LDNRLTDLHAFARLSEEGIDLLLSDSTNAEVPGFVPPERDISNVLRQVFAGAGKRIIVAS
FASHIHRIQQILDAANEYGRRVAFVGRSMVRNMGIARDLGYLKVPPGLVVDVKTLDDLPD
REVVLVCTGSQGEPMAALSRMANRDHQIRIVQGDTVILASSLIPGNENAVYRVINGLTRW
GANVVHKGNAKVHVSGHASAGELLYFYNICRPKNLMPVHGEWRHLRANAELGAMTGVPHD
RIVIAEDGVVVDLIEGKAKISGKVQAGYVYVDGLSVGDVGEPALKDRRILGDEGIISVFV
VMDSSTGKITGGPHIQARGSGIEDSAFVDVVPRITEVLERSAQDGVVEPHQLQQLIRRTL
GKWVSDTYRRRPMILPVVVEV
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcatccgcatcctgaactcggcccgccgccgccgctccccgaaggtggcctccgg
gtcaccccgctcggcggcctcggtgagatcggccgcaacatgaccgtcttcgaatacggc
ggtcgcctgctgatcgtcgactgcggagtgctcttccccgaggaggagcagcccggaatc
gacctgatcctgccggacttctcgtccgtccgggaccgcctcgacgacatcgagggcatc
gtcctcacgcatggccacgaggaccacatcggagcggtcccgtacctgctccgggagaag
cccgacatcccgctgatcggctccaagctgaccctcgccctcatcgaggccaagctccag
gagcaccgcatccgcccgtacaccctcgaggtggtcgaggggaaccgcgaacgcatcggc
cccttcgactgcgagttcgtcgcggtcaaccactccatccccgacgccctcgccgtggcc
atccgcacccccgcgggcatggtggtccacacgggcgacttcaagatggaccagctcccg
ctggacaaccgcctgaccgacctgcacgcgttcgcacggctgagcgaggagggaatcgat
ctcctcctctccgactccacgaacgccgaggttccgggcttcgttccgcccgagcgcgac
atctccaatgtcctgcgacaggtcttcgctggcgccggcaagcggatcatcgtggccagc
ttcgccagccacatccaccgcatccagcagatcctggacgccgcgaacgagtacggccgc
cgggtcgccttcgtcggccgttcgatggtccgcaacatgggcatcgcccgtgacctcggc
tatctgaaggttccgccgggcctggtcgtggacgtcaagacgctcgacgatctgccggac
cgcgaggtggtcctggtctgcacgggctcccagggcgaaccgatggctgccctgtcccgt
atggccaaccgcgaccaccagatccgcatcgtccagggagacacggtcatcctggcctcg
tcgctgatccccggcaacgagaacgcggtctaccgggtcatcaacggcctgacccgctgg
ggtgccaacgtcgtccacaagggcaacgccaaggtccatgtctccggacacgcctcggcc
ggcgagctgctgtacttctacaacatctgccgcccgaagaatctgatgccggtccacggc
gaatggcgccacctgcgcgccaacgccgagctgggcgccatgaccggagtcccgcacgac
cggatcgtcatcgccgaggacggcgtcgtcgtcgacctcatcgagggcaaggcgaagatc
tccggcaaggtccaggccggttacgtctacgtcgacggcctctcggtcggcgatgtcggc
gagccggctctgaaggaccggaggatcctgggcgacgagggcatcatctcggtcttcgtc
gtcatggactcctccaccggcaagatcaccggtggcccgcacatccaggcccgcggctcc
ggcatcgaggactccgcgttcgtggatgtcgttccgaggatcacggaagtcctggagcgc
tcggcgcaggacggcgtcgtcgaaccccaccagctgcagcagctcatccgccgcactctg
ggcaagtgggtctcggacacgtaccgccgcaggccgatgatcctgcctgtggtggttgag
gtctga
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