Streptomyces graminofaciens: SGFS_087820
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Entry
SGFS_087820 CDS
T09325
Name
(GenBank) Pectate lyase
KO
K01051
pectinesterase [EC:
3.1.1.11
]
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf00040
Pentose and glucuronate interconversions
sgrf01100
Metabolic pathways
sgrf02020
Two-component system
sgrf02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
SGFS_087820
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
SGFS_087820
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
SGFS_087820
Enzymes [BR:
sgrf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.1 Carboxylic-ester hydrolases
3.1.1.11 pectinesterase
SGFS_087820
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
SGFS_087820
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Gene cluster
GFIT
Motif
Pfam:
Pectinesterase
Pectate_lyase_4
Beta_helix
DUF6531
Motif
Other DBs
NCBI-ProteinID:
BBC37488
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Position
9758818..9760791
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AA seq
657 aa
AA seq
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MTHLRSKRLPGRGRSLAAVTVLVASFVVGAFTPAEAAQPAAAPRWADEPHGFASLAGGTT
GGEGGKVVTVTDQVSLVRYASAAEPYVIRVKGAIDVEPFGSDVVVASNKTLIGVGDTGEI
VHGELHLGPGTSNVIIRNLTIRDSYVEGDWDGKTTDFDAIQMDTVDHVWIDHNRFEHMGD
GLLDIRKDSRYITVSYNQFKNHNKAFGIGWTSNVQTEITVDHNWFSGTKQRNPSADNCAY
AHLYNNYLSAQVTDGDPVWTYGNWSRGRTRMVIENSYYDGVQHPYQADATAELVQRGSIL
KNVSGRQDVWGEAFDPRDFYAYRLDPAAAVPALVTRFSGPQKRIGTNTTLQVPGAYPTVQ
AAVDAVPDGNDGTVTIRIAPGTYREQVRIPAGKPKLVLQGTGQDRADTVIVYDTPAAYGG
SNGSATVRIAANDVTARHLTFSNDFDEAAHELNGEQALAMKTVGDRIVFEDTAFLGNQDT
LMTDSPRLDVISRVYIRDSYIEGDVDFIYGRATTVIERSVIKALSRGSDTNNGYITAAST
WKDNPYGFLITKSKVISDAPAGSFHLGRPWHPGGEPAAIAQVLFRDTELPAAIKSAPWTD
MSGFSWKDARFTEYRAYGPGAGAGADRPQLPAADAGTYTVGKYLAGVDGWAPHTVRR
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacctccgtagcaagcgcttgccaggcagggggagatccctcgccgccgtcacc
gtgctggtggcctcgttcgtcgtcggcgcgttcacccccgccgaggccgctcagcccgcc
gcggctccccggtgggccgacgagccccatggcttcgcgtccctcgccggcggtaccacc
ggtggcgagggagggaaggtggtgacggtcaccgaccaggtgtccctggtgaggtacgcg
tccgctgcggagccgtacgtcatccgggtcaaaggggcgatcgacgtcgagcccttcggt
tcggacgtggtcgtggcctcgaacaagaccctgatcggcgtcggcgacaccggcgagatc
gtgcacggagagctgcacctgggccccggcaccagcaacgtcatcatccgcaatctgacg
atccgcgactcctacgtcgagggcgactgggacggcaagacgaccgacttcgacgcgatc
cagatggacaccgtcgaccacgtctggatcgaccacaaccgcttcgagcacatgggcgac
gggctgctcgacatccgcaaggacagccggtacatcaccgtctcctacaaccagttcaag
aaccacaacaaggccttcggcatcggctggaccagcaacgtccagaccgagatcacggtg
gaccacaactggttcagcggcaccaaacagcgcaacccgtccgccgacaactgcgcctac
gcgcacctctacaacaactacctctcggcccaggtgaccgacggcgaccccgtgtggacg
tacgggaactggtcgcgcggcaggaccaggatggtcatcgagaacagctactacgacggc
gtccagcatccctaccaggcggatgccacagccgagttggtgcagcgcgggtcgatcctg
aagaacgtcagcgggcggcaggacgtctggggtgaggccttcgacccgagggacttctac
gcctaccggctcgacccggccgccgccgtgcccgcgctggtcacccgcttctccgggccg
cagaagcggatcggcacgaacacgactcttcaggtcccgggcgcgtatccgaccgtgcag
gcagccgtggacgccgtgcccgacggcaacgacggcacggtcacgatccggatcgcgccc
ggcacctaccgcgagcaggtccgcattcccgcgggcaagccgaagttggtgctgcagggg
actggacaggatcgcgccgacaccgtcatcgtctacgacacgcccgccgcgtacggcggc
tccaacggcagcgccacggtacggatcgccgcgaacgacgtcacggcccgccacctcacc
ttcagcaacgacttcgacgaggccgcgcacgagctgaacggcgagcaggccctcgcgatg
aagacggtcggcgaccggatcgtcttcgaggacaccgcgttcctgggcaaccaggacacc
ctgatgaccgacagcccccggctcgacgtgatcagccgggtctacatccgcgactcgtac
atcgagggcgatgtcgacttcatctacggccgggcgaccacggtcatcgagcggtccgtc
atcaaggcgctgagccgcggctcggacaccaacaacggctacatcacggccgcctcgacc
tggaaggacaacccgtacggattcctgatcacgaagtcgaaggtgatcagcgacgcgcct
gccgggtccttccacctcggccggccctggcacccgggcggcgagcccgccgccatcgcc
caagtgctgttccgcgacaccgagttgcccgccgcgatcaagtccgcgccgtggaccgac
atgagcggcttctcgtggaaggacgcccggttcacggagtaccgcgcctacgggccgggc
gcgggcgcgggcgccgaccggccgcagctgccggcggcggacgcggggacgtacacggtc
ggcaagtacctggcgggcgtggacggctgggcgccgcacaccgtccggcgctga
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