Solicola gregarius: L0C25_05450
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Entry
L0C25_05450 CDS
T09807
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L0C25_05450 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgrg03400
]
L0C25_05450 (mfd)
Enzymes [BR:
sgrg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L0C25_05450 (mfd)
DNA repair and recombination proteins [BR:
sgrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L0C25_05450 (mfd)
BRITE hierarchy
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
MFD_D3
UB2H
RecG_dom3_C
Transposase_23
IstB_IS21
CdvA
DUF4350
Motif
Other DBs
NCBI-ProteinID:
UYM06519
UniProt:
A0AA46TJI9
LinkDB
All DBs
Position
complement(1091767..1095321)
Genome browser
AA seq
1184 aa
AA seq
DB search
MTLSALAGKVASDPLLATAVADRRAGLSALDLSAPPSLRPFLASALVGDPADPHTVLVVT
ATQREAEELTESLGDLVGADRVAYYPAWETLPHERLSPRSDTVGLRLAVLRRLVHPSDSG
SANGPVSVVVAPVRSVLQPQVKGLADLEPVVLRPDDEVELDDVVRRLVAAAYHRVDLVEK
RGEFAVRGGIVDVFPPTEEHPLRVEFWGDTVDEVRHFAVADQRSLEKVDVAWAPPCRELL
LTDEVRARARRLAAEHPELAELFEKLSEGHAVEGMESLAPVLVDDMELLVDLVPADTTVL
VCDPERVRARAHDLVATSEEFLQASWAAAASGGDAPIDLGAAAYHTIADVRLHTLTSGRA
WWSTSPFAHDPDAETSDDALESRSLAFEATPMYRGDTERALADIKSWTSAGQTVLLVTPG
PGQAQRSVEILAEHDIAARQVSNLADELAPDVVHVACGEIEHGFVAESLGLVVLTQDDLV
GQRAPSRDERKMPARRRKQIDPLELAPGDFVVHEQHGVGRYVEMMQRVVGGSTREYLVVE
YAASKRGQPADRLFVPTDQLDQVSRYVGGENPSLDRLGGSDWSKRKGRARRAVRQIAAEL
IKLYAARQSTKGHAFGPDSPWQRELEDAFPYVETPDQLSSIDEVKRDMEREVPMDRLICG
DVGYGKTEIAVRAAFKAIQDGKQVILLVPTTLLVQQHYATFAERFGQFPVTLKALSRFQT
DRETREVLAGLEDGSVDLVIGTHRLLQPGVRIKQLGLVIVDEEQRFGVEHKEALKLLRAA
VDVLSMSATPIPRTLEMAITGIREMSTIATPPEERHPVLSFVGGYEDRQVVAAIRRELLR
EGQVFYIHNRVQSIEKAVERIQKLVPEARVAYAHGKMGEQRLEQVMVDFWEKRYDVLVCT
TIVESGLDVSNANTLIIERSDALGLSQLHQLRGRVGRGRERAYAYFLYPQEKPLTETAHE
RLATIAQHSELGGGMAVAMKDLEIRGAGNLLGGEQSGHIADVGFDLYVRLVGEAVAEFRG
DGAPEREVKIELPIDAHLPHEYVPSERLRLEMYKRLAAVRDDAEIEALREELVDRYGEPP
ATVGSLLEVARLRTRARVAGLSDVTVAGNFVRFAPIELAESASLRLQRLYPKSVVKAAVG
TVLIPRPKTAAVGGQPLRDEALLTWCREVIDSVIDREPASAASA
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgactctttctgccctcgcgggcaaggtcgccagtgatcccctcctcgccaccgccgtc
gctgaccggcgtgcggggctgagcgcgctcgacctctccgcgccaccgtccctgcgcccg
ttcctggcgagcgccctcgtcggcgatcccgccgacccgcacaccgtcctcgtcgtgacc
gcgacccagcgcgaggccgaggagctcaccgagtcgctcggagacctcgtcggcgccgac
cgcgtcgcgtactaccccgcctgggagacgctgccgcacgagcggctgtcgccgcgctcc
gacacggtcggcctgcgcctcgccgtactccggcggctcgtccacccgagcgacagtggc
agcgccaacggccccgtctcggtcgtcgtcgcgcccgtacgatccgtgctgcagccgcag
gtcaaggggctcgcggacctcgagccggtcgtcctgcggcccgacgacgaggtcgagctc
gacgacgtcgtacgccggctggtcgccgcggcgtaccaccgcgtcgacctggtagagaag
cgcggtgagttcgccgtgcgtggcggcatcgtcgacgtcttccccccgaccgaggagcat
ccgctccgcgtcgagttctggggcgacaccgtcgacgaggtccgccacttcgccgtcgcc
gaccagcgttccctcgagaaggtcgacgtcgcctgggcgccgccgtgccgtgagctgctg
ctcaccgacgaggtacgcgcgcgggcgcgccggctcgctgccgagcaccccgagctcgcg
gagctgttcgagaagctgtccgagggccacgccgtcgagggcatggagtcgctggcgccc
gtgctcgtcgacgacatggagctgctcgtcgacctggtgccggccgacaccaccgtgctg
gtgtgcgatcccgagcgcgtacgcgcccgcgcccacgacctcgtcgcgaccagcgaggag
ttcctgcaggcgtcgtgggctgccgccgcctccggtggcgacgcacccatcgacctcggc
gccgcggcgtaccacacgatcgccgacgtacgcctgcacacgctcacctcggggcgcgcg
tggtggagcacgtcgccgttcgcgcacgaccccgacgccgagacgagcgacgacgcgctg
gagtcgcgctcgctcgcgttcgaggcgacgccgatgtaccgcggagacaccgagcgggcg
ctggccgacatcaagtcctggacgagcgcgggccagaccgtcctgctggtcaccccgggt
ccgggccaggcgcagcgcagtgtcgagatcctcgccgagcacgacatcgccgcgcgacag
gtctcgaacctcgccgacgagctcgcgcccgacgtcgtgcatgtcgcgtgcggagagatc
gagcacggcttcgtcgccgagtcgctcgggctcgtcgtactcacccaggacgacctcgtg
gggcagcgtgcgccgagccgcgacgagcgcaagatgccggccaggcggcgcaagcagatc
gacccgctcgagctggcaccgggcgacttcgtcgtacacgagcagcacggcgtcggtcgt
tacgtcgagatgatgcagcgcgtggtcggcggctccacccgcgagtacctcgtcgtcgag
tacgccgcgagcaagcgcggccagccggccgaccggctgttcgtaccaaccgatcagctc
gaccaggtgtcgcggtacgtcggcggcgagaacccgtcgctcgaccggctcgggggctcc
gactggtccaagcgcaaggggcgcgctcgccgggccgtacgccagatcgctgccgagttg
atcaagctgtacgccgcgcgccagtcgaccaaggggcatgcgttcggtccggactcgccg
tggcagcgcgagctggaagacgccttcccgtacgtcgagacccccgaccagctgtccagc
atcgacgaggtcaagcgcgacatggagcgcgaggtcccgatggaccggctgatctgcggc
gatgtcggttacggcaagaccgagatcgccgtacgcgcggcgttcaaggcgatccaggac
ggcaagcaggtcatcctgctggtgccgaccaccctgctcgtgcagcagcactatgcgacg
ttcgccgagcggttcggccagttcccggtgaccctcaaggcgctgtcgcggttccagacc
gatcgggagaccagggaggtgctggcggggctcgaggacggctcggtcgacctcgtcatc
ggcacccaccggctgctgcagcccggcgtacgcatcaagcagctcggcctggtcatcgtc
gacgaggagcagcgcttcggcgtcgagcacaaggaggcgctcaaactcctgcgcgccgcg
gtcgatgtgctcagcatgtcggccaccccgatcccgcgcacgctcgagatggcgatcacc
ggcatccgcgagatgtccaccatcgcgacaccaccggaggagcggcatccggtgctgagc
ttcgtgggtgggtacgaagatcggcaggtggtcgcggccatccggcgcgagctgctgcgt
gaggggcaggtgttctacatccataaccgggtgcagagcatcgagaaggccgtcgagcgc
atccagaagctggtgcccgaggcgcgcgtcgcgtacgcacacggcaagatgggcgagcag
cggctcgagcaggtcatggtcgacttctgggagaagcgctacgacgtactcgtctgcacg
acgatcgtcgagtccggtctcgacgtctcgaacgccaatacgctgatcatcgagcgttcc
gacgcgctcggtctttcgcagctgcatcagctgcgcggccgagtggggcgcgggcgtgag
cgcgcgtacgcgtacttcctctatccgcaggagaagccactcaccgagaccgcgcatgag
cgactcgcgacgatcgcgcagcactccgagctgggcgggggcatggcggtcgcgatgaag
gacctcgagatccgcggcgccggcaacctgctcggcggcgagcagtcggggcacatcgcc
gatgtggggttcgacctgtacgtacggctggtcggcgaggcggtcgcggagttccgcggc
gacggcgctccggagcgcgaggtgaagatcgagctgccgatcgacgcgcacctgccgcac
gagtacgtgccgagcgagcggctgcggctggagatgtacaagcggctggccgccgtacgc
gacgacgccgagatcgaggcgctgcgcgaggagctggtcgaccgctacggcgagccaccg
gcgaccgtcggcagcctgctcgaggtcgctcggctgcgtacccgtgctcgggtggcgggg
ctcagcgacgtcaccgttgccggcaacttcgtgcggttcgcgccgatcgagctggcagag
tcggcgtcgctgcggctgcagcggctgtatcccaagtcggtggtcaaggccgcggtcggc
acggtgctcatcccgcgcccgaagaccgccgccgtgggtggccagcctctgcgcgacgag
gccctcctcacctggtgccgcgaagtcatcgacagcgtcatcgaccgcgagcccgcaagc
gcggcgagcgcgtag
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