Streptomyces griseochromogenes: AVL59_34760
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Entry
AVL59_34760 CDS
T04729
Name
(GenBank) RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
sgs
Streptomyces griseochromogenes
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgs03019
]
AVL59_34760
Enzymes [BR:
sgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AVL59_34760
Messenger RNA biogenesis [BR:
sgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AVL59_34760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
AAA_22
nSTAND3
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANP54041
UniProt:
A0A1B1B5J2
LinkDB
All DBs
Position
complement(8032957..8035809)
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AA seq
950 aa
AA seq
DB search
MIVLLSVAPGTLESTMTEDLSPAERYAAARRRAAEQATALASFREMYDFGLDPFQIEACQ
ALEAGKGVLVAAPTGSGKTIVGEFAVHLALMQGKKCFYTTPIKALSNQKYADLCRRYGDG
MVGLLTGDNSINSDAPVVVMTTEVLRNMLYAGSQTLLGLGYVVMDEVHYLSDRFRGAVWE
EVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVIVSEHRPVPLFQHVLAGRRMYD
LFEEGEGHKKAVNPDLARLARMEATRPSYQDRRRGRAMREADRERERRQRSRVWTPGRPE
VIERLDSEGLLPAITFIFSRAACEAAVQQCLYAGLRLNDEEAREQVRALVEERTAAIPSE
DLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPAR
SVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGIDIEGHAVVLWQRGMSPEHLAGLAGT
RTYPLRSSFKPSYNMAVNLVEQFGRHRSRELLETSFAQFQADKSVVGISRQVQRNEEGLE
GYKASMTCHLGDFEEYARLRRELKDRETELARQGANERRAEAAVALEKLKPGDVIHVPTG
KYAGLALVLDPGLPAGRSNGHRGFDHHDGPRPLVLTAERQVKRLASMDFPVPVEPLDRMR
IPKSFNPRSPQSRRDLASALRAKAGHIPPERARKKRSQAADDREIARLRTAIRAHPCHGC
NDREDHARWAERYHRLLRDTSQLERRIEGRTNTIARTFDRIVALLTELDYLRGDEVTEHG
RRLARLYGELDLLASECLREGVWEGLGPAELAACVSALVYEARVGDDAMAPKLPSGKAKA
ALGEMVRIWGRLDAVEEDFRINQTEGVGQREPDLGFAWAAYMWASGTGLDEVLREAEMPA
GDFVRWCKQVIDVLGQIAAASPAEGSTVAKNARKAVDALLRGVVAYSSVG
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atgatcgtcctgttgtcagtggcgcccggtacgctcgaaagcacgatgacagaggacctc
tcaccggccgagcggtacgcggcagcccgcaggcgggcagccgagcaggccaccgcgctc
gcgtccttccgcgagatgtacgacttcggcctcgaccccttccagatcgaggcctgccag
gcgctcgaagcggggaagggtgtgctggtggccgcccccaccggctcgggcaagacgatc
gtgggcgagttcgccgtccacctcgccctcatgcagggcaagaagtgcttctacacgaca
cccatcaaggcactgtcgaaccagaagtacgccgacctgtgccgccgctacggagacggc
atggtcggcctcctcaccggcgacaacagcatcaactccgacgccccggtggtcgtgatg
accaccgaggtgctgcgcaacatgctgtacgcgggctcccagaccctcctcggcctcggc
tatgtggtcatggacgaggtgcactatctctcggaccgcttccgcggcgccgtctgggag
gaagtgatcatccacctccccgagtcggtgaccctggtgtcactgtcggcgaccgtgtcc
aacgccgaggagttcggcgactggctggacaccgtccgcggcgacaccgaggtgatcgtc
tccgagcaccggccggtcccgctgttccagcacgtcctcgccggacgccggatgtacgac
ctgttcgaggagggcgagggccacaagaaggccgtcaaccccgacctcgcccgcctcgcc
cgcatggaggcgacccggccctcgtaccaggaccgcagacgcggccgggcgatgcgcgag
gccgaccgtgagcgcgagcgcagacagcgctcgcgcgtgtggacgccgggccggcccgag
gtcatcgagcggctcgactccgaggggctgttgcccgcgatcaccttcatcttcagccgc
gccgcctgcgaggccgccgtccagcagtgcctgtacgcgggcctcagactcaacgacgag
gaggcgcgggaacaggtccgcgcgctggtcgaggagcgcaccgccgccatcccgtccgag
gacctgcacgtcctcggctactacgagtggctggagggcctggagcgaggtatcgcagcc
caccacgcgggcatgctgccgacgttcaaggaggtcgtcgaggagctgttcgtgcgcggc
ctggtcaaggccgtgttcgcgaccgagaccctggccctcggcatcaacatgcccgcccgc
tcggtggtgctggagaagctcgtcaagtggaacggcgaacagcacgccgacatcacgccg
ggcgagtacacccagctcaccggccgggccgggcgccgcggcatcgacatcgaggggcac
gcggtcgtgctctggcagcgcgggatgagccccgagcacctggccggtctcgcgggcacg
cgtacgtacccgctgcgctccagcttcaagccgtcgtacaacatggcggtcaatctggtc
gagcagttcggccggcaccgctcgcgcgagttgctggagacctccttcgcccagttccag
gccgacaagtcggtcgtcgggatctcccgccaggtgcagcgcaacgaggagggcctggaa
ggctacaaggcctccatgacctgccacctcggcgacttcgaggagtacgcgcggctgcgc
cgcgaactgaaggaccgggagacggagctggcccggcagggcgcgaacgagcggcgtgcg
gaggccgccgtcgccctggagaagctcaagccgggcgacgtcatccacgtgcccaccggc
aagtacgcgggtctcgccctggtcctggacccgggcctgcccgccggccgttccaacggc
caccgcggcttcgaccaccacgacggcccgcgcccgctggtgctgaccgccgaacggcag
gtcaaacggctggcgtcgatggacttcccggtaccggtcgagccgctggaccggatgcgg
atcccgaagagcttcaacccgcgctccccgcagtcccgccgggacctcgcctccgcgctg
cgcgccaaggccgggcacatcccgccggagcgggcccgcaagaagcgttcgcaggccgcc
gacgaccgcgagatcgcacggctgcgcacggcgatccgcgcccacccctgccacggctgc
aacgaccgtgaggaccacgcccgttgggccgagcgctaccaccgcctgctgcgtgacacc
tcgcagctggagcgccgcatcgagggccgtacgaacaccatcgcgcggaccttcgaccgg
atcgtggcgctgctgaccgagctggactacctgcgcggcgacgaggtcaccgagcacggc
agacggctcgcccggctctacggcgaactcgacctgctggccagcgaatgcctgcgcgag
ggcgtctgggagggcctcggcccggccgaactggcggcctgcgtctcggcgttggtgtac
gaggcacgggtcggcgacgacgccatggcgcccaagctgccctccggcaaggcgaaggcc
gcgctcggcgagatggtccggatctggggccgcctggacgcggtggaggaggatttccgg
atcaaccagaccgagggcgtcggccagcgcgagccggacctcggcttcgcctgggccgcc
tacatgtgggcctccggcacgggcctggacgaggtgctgcgcgaggcggagatgccggcg
ggcgacttcgtgcgctggtgcaagcaggtcatcgacgtcctcgggcagatcgccgcggct
tctcccgcggagggctcgaccgtggcgaagaacgcgcgcaaggccgtcgacgcgttgctc
cgcggagtggtcgcctactcgtccgtgggatga
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