Streptomyces griseochromogenes: AVL59_43350
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Entry
AVL59_43350 CDS
T04729
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgs
Streptomyces griseochromogenes
Pathway
sgs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AVL59_43350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgs03400
]
AVL59_43350
Enzymes [BR:
sgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AVL59_43350
DNA repair and recombination proteins [BR:
sgs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AVL59_43350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
UB2H
AAA_22
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ANP55537
UniProt:
A0A1B1B9S1
LinkDB
All DBs
Position
complement(9960038..9963571)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDPALAEAITAATDGNRMHVDLVGPPAARPFAVAALARESARPVLAVTA
TGREAEDLAAALRSLLPAEGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVSLKTGQSADLNEVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRARARALAEQHPELGELLGRIAEGIAVEGMESLAPVLVDDMELLLDVLPKGAMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRDRARELDMM
WWSVSPFAADEDLDADTLKLGMHAPETYRGDTAKALADTKGWLSEGWRTVFVTEAHGPAA
RTAEVLGGEGIAARLDADLGELSPSVVHVSCGSIDYGFVAPALGLAVLTETDLSGQKAAG
KDGARMPARRRKTIDPLTLETGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFGADSPWQRELEDAFPYAETPDQLTTIAEVKDDMEKSVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSDRYSQFPVNVRALSRFQTDTEAKA
VLEGLKDGAVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIATAHGQMSETALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDTFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLETGE
IEEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELTDRYGKL
PEPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVELRESQELRVKRLYPGTVIKPAV
HQVLVPRPKTAKVGGKPLVGRELLGWVGEFLASILGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctggacgccgtagtcaaggaccccgccctcgcggaagcgatc
accgcggccacggacggcaatcgcatgcacgtcgacctcgtcggcccgccggccgcccgc
cccttcgcggtcgccgccctcgcccgggagtccgcccgcccggtgctcgcggtcaccgcg
accggccgggaggccgaggacctggccgccgccctgcgctcgctgctgcccgccgagggc
gtcgtggagtacccctcctgggagacccttccgcacgagcgcctcagcccgcgcagcgac
accgtcggccgccgcctcgccgtgctgcgccgcctcgcccacccccgccctgacgacccc
gagaccggcccggtctccgtggtcgtcgcacccgtgcgctccgtactccagccgcaggtc
aagggcctcggcgacctggagccggtgtctctgaagactggacagagcgccgacctgaac
gaggtcgtggaagccctcgcggccgccgcctacgcgcgcgtggagctcgtggagaagcgc
ggcgagttcgccgtacgcggcggcatcctggacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctcgaagtcgccgaacacggcctgtgggccccgccctgccgcgaactgctg
ctcacggacgacgtgcgcgcacgcgcgcgtgccctcgccgaacagcatccggagctgggc
gaactgctcggcaggatcgccgaggggatcgcggtcgagggcatggagtccctggccccc
gtcctggtcgacgacatggaactactgctcgacgtcctgcccaagggcgccatggccgtc
gtgtgcgacccggagcgggtccgcacgcgtgccgccgacctcgtcgccacctcccaggag
ttcctgcaggcgtcctgggcggccaccgcgggcggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtccgcgaccgcgcgcgcgagctggacatgatg
tggtggtccgtctcgcccttcgccgccgacgaagaccttgacgcggacaccctcaagctc
ggcatgcacgcccccgagacctaccgcggcgacaccgccaaggccctcgccgacaccaag
ggctggctctccgagggctggcgcacggtcttcgtcaccgaggcccacggccccgccgcc
cgcaccgccgaggtgctcggcggcgagggcatcgccgcccgcctggacgccgacctcggc
gaactgagcccctccgtcgtgcacgtctcctgcggctcgatcgactacggcttcgtggcc
ccggcgctggggctcgccgtcctcaccgagaccgacctgtccggccagaaggccgccggc
aaggacggcgcccgcatgccggcccgccgccgcaagaccatcgacccgctcaccctggag
acgggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgtacggtgcagggcgccacccgcgagtacctggtcgtggagtacgcccccgccaagcgc
ggccagccgggcgaccgtctctacatccccaccgaccagctggaacagatcaccaagtac
gtcggcggcgaggcccccacgctgcaccgcctcggcggcgccgactggacgaagaccaag
gcgcgcgcgaagaaggccgtcaaggagatcgccgccgacctgatcaagctctacagcgcc
cgcatggccgcccccggccacgccttcggcgccgactcgccctggcagcgcgagctggag
gacgccttcccgtacgcggagacccccgaccagctcaccaccatcgccgaggtcaaggac
gacatggagaagtcggtccccatggaccgcctgatctgcggcgacgtcggctacggcaag
accgagatcgcggtccgcgccgccttcaaggccgtacaggacggcaagcaggtcgccgtc
ctcgtccccacgaccctgctggtgcagcagcacttcggcacgttctccgaccgctactcg
cagttcccggtgaacgtgcgcgcgctctcccgcttccagaccgacaccgaggcgaaggcg
gtcctggagggcctcaaggacggcgccgtggacgtcgtcatcggcacccaccgcctcttc
tcctccgagacgaagttcaaggacctgggcctggtcatcgtcgacgaggaacagcgcttc
ggcgtcgagcacaaggaacagctgaagaagctccgcgccaacgtggacgtgctgaccatg
tccgcgacaccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatgtcc
acgatcaccaccccgcccgaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagaagcagatcggcgcggccatccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgggtcgagtccatcgaccgcgcggcggcccgactgcgcgacatcgtcccc
gaggcgcgcatcgccaccgcccacggccagatgtccgagaccgccctggagcaggtggtc
gtcgacttctgggagaagaagttcgacgtcctggtgtcgaccacgatcgtcgagtccggc
atcgacatctccaacgccaacaccctgatcgtggagcgcggcgacaccttcggcctgtcc
cagctgcaccagttgcgcgggcgcgtcggccggggccgcgagcgcgggtacgcgtacttc
ctgtacccgccggagaagccgctgaccgagaccgcccacgagcggctcgccaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggt
gccggaaacctgctcggcggcgagcagtccggccatatcgcgggcgtcggcttcgacctg
tacgtccgcatggtcggcgaggccgtcgccgactaccggcgacagctggagaccggcgag
atcgaggaggagccgccgctcgaggtcaagatcgagctgcccgtcgacgcgcacgtcccg
cacgactacgcgcccggcgagcggctgcgcctgcaggcctaccgcgccatcgcctccgcc
aacagcgaggaggacatcaaggccgtccgcgaggaactcaccgaccgctacggcaagctg
cccgagccggtggagaacctgctgctggtggccggcctcaggatgctcgcgcgcgcgtgc
ggcgtcggcgagatcgtcctgcagggcaccaacatccgcttcgcaccggtggagttgcgc
gaatcgcaggagctgcgggtcaagcggctgtacccgggcacggtcatcaagccggccgtg
caccaggtgctggtgccgcgccccaagaccgcgaaggtgggcggcaagccgctggtcggc
cgggaactgctgggctgggtcggggagttcctcgcctcgatcctcgggtcgtga
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