Streptomyces griseochromogenes: AVL59_46245
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Entry
AVL59_46245 CDS
T04729
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
sgs
Streptomyces griseochromogenes
Brite
KEGG Orthology (KO) [BR:
sgs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgs03019
]
AVL59_46245
Enzymes [BR:
sgs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AVL59_46245
Messenger RNA biogenesis [BR:
sgs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AVL59_46245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
nSTAND3
T2SSE
NACHT
AAA_16
SLFN-g3_helicase
NTPase_1
TsaE
PhoH
ResIII
AAA_25
MetJ
Motif
Other DBs
NCBI-ProteinID:
ANP56034
UniProt:
A0A1B1BB17
LinkDB
All DBs
Position
10557024..10560980
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AA seq
1318 aa
AA seq
DB search
MSTHPAPALGTLATRLTELSLRDAHRLGRRLEGARKIRKPEAQAAVLAEIEAEIGKASAR
MDERRSRVPAVIYPEQLPVSQKKDRIAEAIRDHQVVIVAGETGSGKTTQIPKICMELGRG
VRGMIGHTQPRRIAARTVAERVADELKTPLGEAVGWKVRFTDQVNPDATFVKLMTDGILL
AEIQTDRELRAYDTIIIDEAHERSLNIDFLLGYLAQLLPKRPDLKVVITSATIDPERFSR
HFGDAPIIEVSGRTYPVEVRYRPLLEEDSEDADRDQITAITDAVEELMAEGKGDILVFLS
GEREIRDTADALTKKQYRFTEVLPLYARLSHAEQHRVFQPHTGRRIVLATNVAETSLTVP
GIKYVIDPGFARISRYSHRTKVQRLPIEPVSQASANQRKGRCGRTSDGICIRLYSEDDFL
ARPEFTDAEILRTNLASVILQMTAAGLGDIEKFPFIDPPDHRNIRDGVQLLQELHALDPA
QKDPRKRLTDTGRKLAQLPVDPRLARMVLEADKNGCVREVMVIAAALSIQDPRERPADKQ
AQADQQHARFKDETSDFLAYLNLWRYVREQQKERGSSSFRRMCKQEYLNFLRIREWQDIY
TQLRTVAKQMGMHLEEPSAGTDAPSDRVHISLLAGLLSHVGMKDVKDGNKNEYLGARSAK
FAVFPGSALFRKQPRFLMSAELVETSRLWARVNAKIEPEWVEPLAGHLLKRTYSEPHWEK
DQAAVMAYEKVTLYGVPIVAQRKVNYGRIDPEVSRELFIRNALVEGDWRTHHKFYADNRK
LLSEVEELEHRARRRDIVVDDDTLFDFYDQRVPGHVVSGAHFDSWWKHRRHEQPDFLDFE
REMLIRESAEAVTKADYPDSWRQGPLKFRVTYQFEPGADADGVTVHIPLQVLNQVTDEGF
DWQIPGLREEVVTELIRSLPKPIRRHYVPAPNYAKAFLERAVPLQEPLTVTMTRELKRTV
GVPFEADDFDWAKVPDHLKITFRIVDERRRKLAEDKDLEALKLRLKPKARKALSQAAAAT
ASREGGESLERKGLTDWTIGTLTRVFETRRAGQPVKAYPALVDDGDTVSVRLFDTEAEQA
EAMWKGTRRLILRNIPVNPAKFASEKLTNAQKLALSANPHGSVQALVDDCAMAAADKLIG
DFGGPVWDEESFRKLYDKVRAEIVDTTVRTVGQVQQVLAAWQACERRLKATKSPALLANL
TDVRGQLDALVKPGFVTWAGIRRLPDLMRYLVAADRRLQQMPTGVQRDTTRMEKVHEMQD
EYAWLLEQLPQGRPVPSSVLDIRWMIEELRVSYFAHALGTAYPVSDKRIVKAIDAAVP
NT seq
3957 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgcatccagcccccgccctcggcaccctcgccacccgtctgaccgaactgtcg
ctgcgcgacgcgcaccggctcggcaggcggctcgagggcgcgcgcaagatccgtaagccg
gaggcccaggccgccgtcctcgccgagatcgaggccgagatcggcaaggcctcggcacgt
atggacgagcggcgctcccgtgtgcccgccgtcatctacccggagcagctcccggtcagc
cagaagaaggaccggatcgccgaggccatccgcgatcaccaggtcgtcatcgtggccggt
gagaccggctccggcaagaccacgcagatccccaagatctgtatggagctggggcgcggc
gtccgcggcatgatcgggcacacccagccccgccgtatcgccgcccggaccgtcgccgag
cgcgtcgccgacgagctgaagacgcccctcggcgaggccgtcggctggaaggtccgcttc
accgaccaggtgaacccggacgccaccttcgtcaagctgatgacggacggcatcctgctc
gccgagatccagaccgaccgcgagctgcgcgcctacgacacgatcatcatcgatgaggcc
cacgagcggtccctcaacatcgacttcctgctcgggtacctggcccagctgctgccgaag
cggccggatctgaaggtcgtgatcacttccgcgaccatcgaccccgagcgcttctcccgg
cacttcggcgacgccccgatcatcgaggtcagcggccgcacctatcccgtcgaggtccgc
taccggccgctcctcgaagaggactccgaggacgccgaccgggaccagatcaccgcgatc
accgacgccgtcgaggagctgatggcggaggggaagggcgacatcctcgtcttcctctcc
ggcgagcgggagatccgggacaccgcggacgcgctcacgaagaagcagtaccggttcacc
gaggtgctgccgctgtacgcccggctctcgcacgccgagcagcaccgggtcttccagccg
cacaccggacgcaggatcgttctggcgaccaacgtcgccgagacctccctgaccgtcccc
ggcatcaagtacgtcatcgaccccggcttcgcccggatcagccgctacagccaccgcacc
aaggtccagcggctgcccatcgagccggtctcccaggccagcgccaaccagcgcaagggc
cgctgcggccgtacgtccgacggcatctgcatccggctgtacagcgaggacgacttcctc
gcccggccggagttcaccgacgccgagatcctgcgcacgaacctcgcctccgtcatcctc
cagatgaccgcggccggcctcggcgacatcgagaagttccccttcatcgacccgccggac
caccgcaacatccgcgacggcgtgcagttgctgcaggagctgcacgcgctggacccggcc
cagaaggacccgcgcaagcgcctcaccgacaccggccgcaagctggcccagctgcccgtc
gacccccggctggcccgcatggtcctggaggcagacaagaacggctgcgtgcgcgaggtc
atggtgatcgcggccgcgctgtccatccaggacccgcgcgagcgcccggcggacaagcag
gcccaggccgatcagcagcacgcccgcttcaaggacgagacgagcgacttcctcgcctac
ctgaacctgtggcggtacgtccgcgagcagcagaaggagcgcggatcgtcgtccttccgc
cggatgtgcaagcaggagtacctgaacttcctgcgcattcgcgaatggcaggacatctac
acccagctgcgcacggtcgcgaagcagatgggaatgcacctggaggagccttcggcgggt
accgacgccccctccgaccgcgtccacatctcgctcctggccggcctcctctcccacgtc
gggatgaaggacgtgaaggacggcaacaagaacgagtacctcggcgcccgcagcgccaag
ttcgcggtcttcccgggctcggcgctgttccgtaaacagccccggttcctgatgtccgcc
gaactcgtggagacctcccgcctctgggcccgggtcaacgcgaagatcgagccggagtgg
gtcgaaccgctggccggacacctcctgaagcggacgtacagcgaaccgcactgggagaag
gaccaggccgccgtgatggcgtacgagaaggtgacgctgtacggcgtcccgatcgtcgcc
cagcggaaggtgaactacggccggatcgacccggaggtctccagggagctgttcatccgc
aacgccctggtcgagggcgactggcgcacgcaccacaagttctacgcggacaaccgcaag
ctgctcagcgaggtcgaggagctggagcaccgcgcccggcgccgggacatcgtcgtcgac
gacgacacgctcttcgacttctacgaccagcgggtgcccggacacgtggtctccggtgcc
catttcgactcctggtggaagcacaggcggcacgagcagcccgacttcctggacttcgag
cgggagatgctcatccgcgagtcggcggaggcggtcaccaaggccgactacccggactcg
tggcggcagggtccgctcaagttccgggtgacgtaccagttcgagccgggcgcggacgcc
gacggcgtgaccgtccacatcccgctccaggtgctcaaccaggtcacggacgagggcttc
gactggcagatcccgggcctgcgcgaggaggtggtgacggagctgatccgttccctcccg
aagccgatccgccgtcactacgtgcccgcgccgaactacgcgaaggcgttcctggagcgc
gccgtgccgctgcaggagccgctgacggtgacgatgacgcgcgagctgaagcgcacggtc
ggcgtccccttcgaggcggacgacttcgactgggcgaaggtccccgaccatctgaagatc
accttccgtatcgtcgacgagcggcgccggaagctggccgaggacaaggacctggaggcg
ctgaagctgcggctgaagcccaaggcgcgcaaggccctgtcccaggccgcggccgcgacc
gcatcccgcgagggcggcgagtccctggagcgcaagggcctcaccgactggacgatcggc
acgctcacccgggtcttcgagacgcgccgggccgggcagccggtgaaggcgtacccggcg
ctggtggacgacggcgacacggtctcggtccgcctcttcgacacggaggccgagcaggcg
gaagccatgtggaagggcacccggcgcctcatcctgcgcaacatcccggtgaacccggcg
aagttcgcatccgagaagctgaccaacgcccagaagctggcgctctccgccaacccgcac
ggctccgtccaggccctcgtcgacgactgcgcgatggccgcggccgacaagctgatcggg
gacttcggcgggccggtgtgggacgaggagtcgttccggaagctgtacgacaaggtgcgc
gcggagatcgtcgacacgacggtccgtacggtcgggcaggtgcagcaggtcctggcggcc
tggcaggcctgtgagcgccgtctgaaggccacgaagagccccgccctcctggcgaacctg
acggacgtccgggggcagctggacgccctggtgaagcccggattcgtgacgtgggcgggc
atacgacgcctgcccgacctgatgcgctacctggtggccgccgaccggcgcctgcagcag
atgccgaccggcgtccagcgggacaccacgcgcatggagaaggtccacgagatgcaggac
gagtacgcctggctcctggaacagctgccgcagggccggccggtgccgtcctcggtcctg
gacatccgctggatgatcgaggagctccgggtcagctatttcgcgcacgcgctcggcacg
gcgtacccggtctccgacaagcggatcgtgaaggcgatcgacgccgccgtaccgtaa
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