Streptomyces glaucescens: SGLAU_14165
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Entry
SGLAU_14165 CDS
T03327
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgu
Streptomyces glaucescens
Pathway
sgu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SGLAU_14165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgu03400
]
SGLAU_14165 (mfd)
Enzymes [BR:
sgu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SGLAU_14165 (mfd)
DNA repair and recombination proteins [BR:
sgu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SGLAU_14165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
AAA_22
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AIR98819
UniProt:
A0A089XCE0
LinkDB
All DBs
Position
complement(3252520..3256053)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSLHGLLDAVVKDAALAEAIKAAADGNRMHVDLVGPPAARPFAIAALARESARPVLAVTA
TGREAEDLAAALRSLLPPDGVVEYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPSPDDP
ETGPVQVVVAPVRSVLQPQVKGLGDLEPVALRSGATADLEEVVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTPQVRERAAALAEEHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLLDVLPKGSMAV
VCDPERVRTRASDLVATSQEFLQASWAATAGGGEAPIDVGAASLWSIADVRERARELDIM
WWSVSPFAADDALEEADTLKLGMHAPDTYRGDTAKALADTKGWLADGWRTVYVTEGHGPA
ARTVEVLGGEGVPARLVTGLTEITPSVVHVACGSIDHGFVDPGLKLAVLTETDLSGQKAA
GRDGTRMPARRRKTIDPLTLEPGDHIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAK
RGQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYS
ARMAAPGHSFAPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYG
KTEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYAQFPVNVKALSRFQTDTEAK
AVLEGLREGSVDVVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLT
MSATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQVF
YIHNRVESIDRAAARLRDIVPEARIATAHGQMSESALEQVVVDFWEKKFDVLVSTTIVES
GIDISNANTLIVERGDIFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATI
AQHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRRQLEEG
GAEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASANSEEDIKAVREELVDRYGKL
PEPVENLLLVAALRMFARACGVGEIVLQGNNIRFAPVELRESQELRLKRLYPGTVIKATA
HQVLVPRPKTAKVGGKPLVGRELLAWVGEFLTSVLGS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgccgtcgtcaaggacgccgcactcgcggaagccatc
aaggccgccgcggacggcaaccggatgcacgtcgacctggtcggccccccggcggcccgc
cccttcgcgatcgccgcgctggcccgcgagtccgcccgccccgtgctcgcggtcaccgcc
accggccgcgaggccgaggacctcgccgcggcgctgcgctccctgctgccgccggacggc
gtcgtggagtacccctcctgggagaccctgccgcacgagcggctctcgccgcgcagcgac
accgtgggccgccggctcgccgtgctgcgccgcctggcccacccgagccccgacgacccc
gagaccggcccggtccaggtcgtcgtcgcgcccgtccgctccgtgctccagccgcaggtc
aagggcctgggcgacctggaacctgtggcgctcaggtccggcgcgacggcggacctcgag
gaggtcgtcgaagctctcgccgccgccgcctacgcgcgcgtggagctggtcgagaagcgc
ggcgagttcgccgtccgcggcggcatcctcgacgtgttcccgcccaccgaggaacacccc
ctgcgcatcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaggtcgccgagcacggcctgtgggccccgccctgccgcgaactgctg
ctgacgccgcaggtccgggagcgggccgccgcgctcgccgaggaacaccccgaactgggc
gaactcctcggcaagatcgccgagggcatcgcggtggagggcatggagtcgctggcgccc
gtcctcgtcgacgacatggaactgctgctcgacgtgctgcccaagggctcgatggcggtc
gtctgcgacccggagcgggtgcgcacgcgcgcctccgacctggtcgccacctcgcaggag
ttcctccaggcgtcctgggcggccaccgcgggtggcggcgaggcgcccatcgacgtcggc
gcggcctccctgtggtccatcgccgacgtgcgtgagcgcgcgcgcgagctggacatcatg
tggtggtcggtgtcgccgttcgccgcggacgacgcgctggaggaggccgacaccctcaag
ctcggcatgcacgcccccgacacctaccgcggcgacaccgcgaaggcgctcgccgacacc
aagggctggctcgccgacggctggcgcacggtctacgtcaccgagggccacggcccggcc
gcccgcaccgtcgaggtgctcggcggggagggcgtccccgcccgcctggtgaccggcctc
accgagatcaccccgtcggtcgtgcacgtggcgtgcggctcgatcgaccacggcttcgtc
gaccccggcctcaagctggcggtgctcaccgagaccgacctgtccgggcagaaggcggcc
ggccgggacggcacccgcatgcccgcgcggcgccgcaagaccatcgacccgctcaccctg
gaaccgggcgaccacatcgtccacgagcagcacggcgtcggccggtacatcgagatggtc
cagcgcaccgtgcagggcgccacccgcgagtacctggtggtggagtacgcccccgccaag
cgcggccagcccggcgaccggctgtacatcccgaccgaccagctggagcagatcaccaag
tacgtcggcggcgaggcgcccaccctgcaccggctcggcggcgccgactggaccaagacc
aaggcacgcgccaagaaggcggtcaaggagatcgctgccgacctgatcaagctctacagc
gcccgcatggccgctcccgggcactccttcgcgccggacaccccctggcagcgcgagctg
gaggacgccttcccctacgcggagacccccgaccagctcaccaccatcgccgaggtcaag
gaggacatggagaagaccgtccccatggaccgcctgatctgcggcgacgtcggctacggc
aagacggagatcgcggtccgcgccgccttcaaggccgtccaggacggcaagcaggtcgcc
gtgctggtgccgaccacgctgctggtgcagcagcacttcgggacgttcagcgagcggtac
gcgcagttccccgtgaacgtgaaggcgctctcccggttccagaccgacaccgaggccaag
gcggtcctggaagggctgcgcgagggctcggtggacgtggtcatcggcacccaccggctg
ttctcctcggagaccaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcgc
ttcggcgtcgagcacaaggagcagctgaagaagctgcgggccaacgtggacgtgctgacg
atgtcggcaacaccgatcccgcgcaccctggagatggcggtcaccggcatccgcgagatg
tccacgatcaccaccccgccggaggagcggcacccggtgctcaccttcgtcgggccgtac
gaggagaagcagatcggcgcggcgatccgccgcgaactgctgcgcgagggccaggtcttc
tacatccacaaccgggtcgagtcgatcgaccgcgcggcggcccggctgcgggacatcgtg
cccgaggcgcggatcgccaccgcgcacggccagatgtcggagtcggccctggaacaggtc
gtcgtcgacttctgggagaagaagttcgacgtgctggtgtcgacgacgatcgtcgagtcc
ggcatcgacatctccaacgccaacaccctgatcgtggagcgcggcgacatcttcggcctg
tcccagctgcaccagctgcgcggccgggtgggccggggccgcgagcgcggctacgcgtac
ttcctgtacccgccggagaagccgctgaccgagaccgcgcacgagcggctggcgaccatc
gcccagcacaccgagatgggtgcgggcatgtacgtggcgatgaaggacctggagatccgc
ggcgcgggcaacctgctcggcggcgagcagtccggccacatcgccggtgtcggcttcgac
ctgtacgtgcggatggtcggcgaggccgtcgcggactaccggcggcagctggaggaggga
ggggcggaggagccgccgctcgaggtcaagatcgagctgccggtcgacgcgcacgtcccg
cacgactacgcgccgggcgagcggctgcgcctccaggcctaccgggccatcgcctccgcc
aactccgaggaggacatcaaggcggtccgcgaggaactcgtcgaccggtacggcaagctg
cccgagccggtggagaacctgctgctggtcgcggcgctgcggatgttcgcgcgggcctgc
ggcgtcggtgagatcgtgctccagggcaacaacatccgcttcgcgccggtggagttgcgc
gagtcgcaggagctgcggctcaagcggctctacccggggacggtcatcaaggcgacggcc
caccaggtgctggtgccgcgcccgaagaccgcgaaggtcggcggcaagccgctggtcgga
cgggaactgctggcgtgggtcggggagttcctgacgtcggtgctggggtcgtag
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integrated database retrieval system
