Streptomyces gardneri: H4W23_08050
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Entry
H4W23_08050 CDS
T07252
Name
(GenBank) DEAD/DEAH box helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
sgx
Streptomyces gardneri
Brite
KEGG Orthology (KO) [BR:
sgx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgx03019
]
H4W23_08050
Enzymes [BR:
sgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
H4W23_08050
Messenger RNA biogenesis [BR:
sgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
H4W23_08050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
ResIII
Helicase_C
MTR4-like_stalk
AAA_22
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
QPK44563
LinkDB
All DBs
Position
complement(1785417..1788242)
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AA seq
941 aa
AA seq
DB search
MTEDLTPAERYAAALARNAEQATALFPFRELYDFDLDPFQIEACKALEAGKGVLVAAPTG
SGKTIVGEFAVHLALSQGRKCFYTTPIKALSNQKFADLVKRYGADKVGLLTGDNSVNGDA
PIVVMTTEVLRNMLYAGSQALSGLGYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSL
SATVSNAEEFGDWLDTVRGDTEVIVSESRPVPLWQHVLAGRRMYDLFEEETDHGGRGSSR
REVNPDLVRLARTENSTYNPRDRRRGKMVREADRERERRQRSRIWTPGRPEVIERLDAEG
LLPAITFIFSRAACEAAVQQCLHAGLRLNNEEGRQRVREIVEERTASIPTEDLHVLGYYE
WLEALERGIAAHHAGMLPTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVK
WNGEQHADITPGEYTQLTGRAGRRGIDVEGHAVVLWQRGFDPGHLAGLAGTRTYPLRSSF
RPSYNMAVNLVDQFGRHRSRELLETSFAQFQADRSVVGISRQVQKNEEGLEGYREGMTCH
LGNFEEYARLRRDLKDRETELARQGAAQRRAQAAGSLEKLKPGDIIHVPTGKFAGLALVL
DPGIPAGRTNGHRGFEHHDGPRPLVLTAERQVKRLASIDFPVPVEALDRMRIPKSFNPRS
PQSRRDLASALRTKAGHVHPERHHRQRAAAADDREIARLRTALRAHPCHGCDEREDHARW
AERYHRLQRDTQQLERRIEGRTNTIARTFDRIVALLTELDYLRGDEVTDNGKRLARLYGE
LDLLASECLRDRVWEGLTPPELAACVSALVFESRQADDAVAPKLPTGNAKAALGEMVRIW
GRLDALEEEFKINQAEGVGQREPDLGFAWAAYQWASDKSLDEVLREADMPAGDFVRWCKQ
VIDVLGQIAAAAPRENSTVSKNARKAVESLLRGVVAYSSVG
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggacctcacaccagccgagcggtacgcggccgccctcgcccgaaacgccgag
caggccaccgcgctgttccccttccgcgagctctacgacttcgatctggaccccttccag
atcgaggcctgcaaggccctcgaagcgggcaagggcgtgctcgtcgccgcgcccacgggc
tccggcaagaccatcgtcggcgagttcgccgtccatctcgccctcagccagggccgcaag
tgcttctacacgacgcccatcaaggcgctgtcgaaccagaagttcgccgacctcgtgaag
cggtacggcgcggacaaggtcgggctgctcaccggcgacaacagcgtcaacggggacgcg
ccgatcgtcgtcatgaccaccgaagtcctccgcaacatgctgtacgcggggtcccaggcg
ctctccggcctcggctacgtcgtgatggacgaggtgcactacctctccgaccgcttccgc
ggcgccgtctgggaggaagtgatcatccacctccccgaatccgtcacgctggtctcactc
tccgcgaccgtgtccaacgccgaggagttcggcgactggctcgacaccgtccgcggcgac
accgaggtcatcgtctcggagagccgtcccgtgcccctctggcagcacgtcctggccgga
cgccggatgtacgacctcttcgaggaggagaccgaccacggcggccgcggctcctcccgc
cgcgaggtcaaccccgacctcgtccgcctggcccgcacggagaactcgacgtacaacccg
cgtgaccggcgccgcggcaagatggtccgtgaggccgaccgcgagcgcgagcgccgccag
cgctcccgcatctggacgcccggccgccccgaggtcatcgagcgcctcgacgccgagggg
ctgctgcccgccatcaccttcatcttcagccgcgccgcctgcgaggccgcggtccagcag
tgcctccacgccgggctccgcctcaacaacgaggagggacgccagcgcgtccgcgagatc
gtcgaggagcggaccgcctccatccccaccgaggacctccacgtcctcggctactacgag
tggctcgaagcgctggagcggggcatcgccgcccaccacgccggcatgctccccaccttc
aaggaggtcgtcgaggagctcttcgtccgcggcctcgtgaaggcggtcttcgccaccgag
accctcgccctgggcatcaacatgcccgcgcggtccgtcgtcctggagaagctcgtcaag
tggaacggcgagcagcacgccgacatcacgcccggcgagtacacccagctcaccggccgc
gccggacgccgtggcatcgacgtcgaaggccacgccgtggtcctctggcagcgcggtttc
gaccccggccacctggccggactcgcgggcacgcgcacctacccgctgcgttccagcttc
cgtccctcgtacaacatggcggtcaacctcgtcgaccagttcggccggcaccgctcgcgc
gagctcctggagacctccttcgcgcagttccaggccgaccgctccgtcgtgggcatctcg
cgccaggtgcagaagaacgaggagggtctggagggctaccgcgagggcatgacctgccac
ctcgggaacttcgaggagtacgcgcggctccgccgcgacctcaaggaccgcgagacggaa
ctggcccggcagggtgccgcccagcggcgcgcccaggccgcaggctcgctggagaagctc
aagcccggcgacatcatccacgtcccgaccggcaagttcgccggcctcgctctcgtcctc
gaccccggcatccccgccgggcggaccaacgggcaccgcgggttcgagcaccacgacgga
ccccggcccctcgtcctcaccgccgagcggcaggtcaagaggctcgcctccatcgacttc
ccggtccccgtcgaggcgctcgaccgcatgcggatccccaagtccttcaacccgcgctcg
ccgcagtcccgcagggacctggcctccgcgctgcggaccaaggccgggcacgtccacccc
gagcgtcaccacaggcagcgcgcggccgccgccgacgaccgtgagatcgcccggctgcgc
accgcgctgcgcgcccacccctgccacggctgcgacgagcgcgaggaccacgcccgctgg
gccgagcgctaccaccgcctccagcgcgacacacagcagctggagcggcgcatcgagggc
cgtaccaacacgatcgcccgcaccttcgaccggatcgtcgcgctcctcaccgagctcgac
tacctgcggggcgacgaggtcaccgacaacggcaagcggctggcccggctctacggcgag
ctcgacctgctggcgagcgagtgcctccgggaccgtgtctgggaggggctcaccccgccc
gaactcgccgcctgtgtctcggccctggtgttcgagtcgcgccaggccgacgacgcggtc
gcgccgaagctgcccacgggcaacgccaaggcggcgctcggtgagatggtccggatctgg
gggcgtctcgacgccctcgaagaggagttcaagatcaaccaggcggaaggggtcggccag
cgagagcccgacctcggcttcgcctgggccgcctaccagtgggcctccgacaagagcctc
gacgaggtgctccgcgaggcggacatgcccgccggcgacttcgtccgctggtgcaagcag
gtcatcgacgtcctcggccagatcgccgcggcggcgcccagggagaacagcacggtctcc
aagaacgcccgtaaggccgtcgagtcgctgctgcggggcgtcgtcgcctacagctcggtg
ggctga
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