Streptomyces globosus: C0216_27385
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Entry
C0216_27385 CDS
T06864
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
sgz
Streptomyces globosus
Pathway
sgz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sgz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C0216_27385 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sgz03400
]
C0216_27385 (mfd)
Enzymes [BR:
sgz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0216_27385 (mfd)
DNA repair and recombination proteins [BR:
sgz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C0216_27385 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
4HBT_3
AAA_22
RecG_dom3_C
MFD_D3
DUF6099
Motif
Other DBs
NCBI-ProteinID:
AXE26668
UniProt:
A0A344U6Z7
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All DBs
Position
complement(6175884..6179414)
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AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVTRDAALTEAVTAAGDGNRMHVDLVGPPAARPLAIAALAARTGRTVLAVTA
TGREAEDLAAALRSFLPSDEVAEFPSWETLPHERLSPRSDTVGRRLAVLRRLVHPSKDDP
AAGPVSVVVAPIRSVLQPQVKGLADLVPVSLRRGESTDLGDIVEALAAAAYARVELVEKR
GEFAVRGGILDVFPPTEEHPLRIEFWGDEVEEVRYFKVADQRSLEIAEHGLWAPPCRELL
LTAEVRERAAALAEDHPELGELLGKIAEGIAVEGMESLAPVLVDDMELLVDVLPAGSMAV
VCDPERVRTRAADLVATSQEFLMASWAATAGGGEAPIDVGAASLRGIADVRDRARELGMM
WWSVSPFAADEELSADTLKLGMQAAEAYRGDTARALADTKGWIADGWRTVYLTEGHGPAA
RTVEVLSGEGIAARLEAGLGELATGLVHVACGALATGFVDPALRLAVLTETDLTGQRTAV
KDLGRMPTRRRKSIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLLVEYAPAKR
GQPGDRLYIPTDQLEQVTKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHSFGPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKSVPMDRLVCGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVNVRALSRFQSDTEAKA
TLEGLKDGSVDVVIGTHRLFSQETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAIRRELLREGQCFY
IHNRVESIDRAAARLREIVPEARIATAHGQMSEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVGEAVADYRAAVEGGA
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASVNSEEDVKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGDITLQGPNVRFGPVELRESQELRLKRLYPGSVLKPAAS
QVLVPRPKTARVGGKPLVGRELLAWTGEFLTTVLGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggactgctcgacgccgtcacccgggatgccgccctcaccgaggcggtc
accgcggccggggacggcaaccggatgcacgtggacctcgtcggcccgcccgccgcacgg
cccctggcgatcgccgcgctggccgcccgcaccgggcggaccgtcctcgcggtcaccgcc
accggccgggaggccgaggacctggccgccgccctgcgctccttcctgccgtcggacgag
gtcgccgagttcccgtcgtgggagacgctgccgcacgagcggctctcgccgcgcagcgac
accgtcggccgccgcctggccgtcctgcgccggctcgtccaccccagcaaggacgacccg
gcggccgggcctgtctcggtcgtggtcgcaccgatccggtccgtgctccagccgcaggtc
aagggcctggcggacctggtgcccgtcagtctgcggcggggcgagagcaccgacctcggc
gacatcgtcgaggcgctggcggcggccgcgtacgcgcgggtggaactggtggagaagcgc
ggcgagttcgccgtccgcggcggcatcctcgacgtgttcccgccgaccgaggaacacccg
ctgcgcatcgagttctggggcgacgaggtcgaggaggtccgctacttcaaggtcgccgac
cagcggtccctggagatcgccgagcacgggctgtgggcgccgccctgccgcgagctgctg
ctgacggccgaggtccgcgagcgggccgcggccctggccgaggaccaccccgagctcggc
gaactcctcgggaagatcgccgaggggatcgcggtggagggcatggagtccctcgcgccg
gtcctcgtcgacgacatggagctcctcgtcgacgtgctgcccgccgggtcgatggccgtc
gtctgcgacccggagcgggtccgcacgcgcgccgcggacctcgtcgccaccagccaggag
ttcctgatggcgtcctgggcggccaccgccggcggcggcgaggccccgatcgacgtcggc
gccgcctcgctgcgcggcatcgccgacgtccgcgaccgggcgcgcgagctcggcatgatg
tggtggtccgtctcgccgttcgccgccgacgaggagctgtccgccgacaccctcaagctg
ggcatgcaggccgcggaggcctaccgcggcgacaccgcccgcgcgctcgccgacaccaag
ggctggatcgccgacggctggcgcaccgtctacctgaccgagggccacggacccgccgcc
cgcaccgtcgaggtgctgtccggcgagggcatcgcggcccgcctggaggccgggctcggc
gagctggcgaccggcctcgtccacgtggcgtgcggggcgctcgccaccggcttcgtcgac
ccggcgctgcggctggcggtcctgacggagacggacctgacggggcagcggacggccgtg
aaggacctcggccggatgccgacgcggcgccgcaagtccatcgacccgctcaccctggag
gcgggcgactacatcgtccacgagcagcacggcgtgggccgctacatcgagatggtgcag
cgcaccgtgcagggcgccacccgcgagtacctgctggtggagtacgcgcccgccaagcgg
ggccagcccggcgaccggctgtacatcccgacggaccagctggagcaggtcaccaagtac
gtgggcggcgaggcgccgacgctgcaccggctcggcggcgccgactggacgaagacgaag
gcccgcgcgaagaaggcggtcaaggagatcgccgccgacctgatcaagctgtacagcgcg
cggatggcggcgcccggccactccttcggcccggacacgccctggcagcgcgagctggag
gacgcgttcccgtacgcggagacgcccgaccagctgacgacgatcgccgaggtcaaggag
gacatggagaagtccgtgcccatggaccggctggtgtgcggcgacgtcggctacggcaag
accgagatcgcggtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgccgtg
ctcgtcccgacgacgctgctggtgcagcagcacttcggcacgttctccgagcggtacagc
cagttcccggtgaacgtgagggcgctgtcgcggttccagagcgacaccgaggccaaggcc
accctggagggcctgaaggacggctcggtggacgtggtgatcggcacgcaccgcctgttc
tcgcaggagacgaagttcaaggacctcggcctggtcatcgtcgacgaggagcagcggttc
ggcgtcgagcacaaggagcagctgaagaagctgcgggcgaacgtggacgtgctgacgatg
tcggcgacgccgatcccgcggaccctggagatggcggtgacgggcatccgcgagatgtcg
acgatcaccacgccgccggaggagcggcacccggtgctgacgttcgtcggcccgtacgag
gagaagcagatcggggcggcgatccggcgggagctgctgcgcgaggggcagtgcttctac
atccacaaccgggtcgagtcgatcgaccgggcggcggcccggctgcgggagatcgtgccg
gaggcgcggatcgcgacggcgcacgggcagatgtcggagcaggccctcgaacaggtcgtc
gtggacttctgggagaagaagttcgacgtgctcgtctcgacgacgatcgtggagtccggg
atcgacatctcgaacgccaacaccctgatcgtggagcgcggcgacaacttcggcctgtcg
cagctgcaccagctgcgcggccgggtcgggcgcggccgggagcgggggtacgcgtacttc
ctgtacccgccggagaagccgctgacggagaccgcgcacgagcggctcgcgacgatcgcc
cagcacaccgagatgggcgccggcatgtacgtggcgatgaaggacctggagatccgcggt
gcggggaacctgctcggcggggagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacatccggatggtcggcgaggcggtggccgactaccgggcggccgtcgagggcggggcg
gaggaggagccgccgctggaggtgaagatcgagcttccggtcgacgcgcacgtcccgcac
gactacgcgccgggggagcggctgcgcctgcaggcgtaccgggcgatcgcctcggtgaac
tccgaggaggacgtcaaggcggtgcgggaggagctcaccgaccgctacggcaagctgccc
gagccggtggagaacctgctgctggtggcggggctgcggatgctggcacgggcctgcggg
gtcggcgacatcaccctccaggggccgaacgtgcggttcgggccggtggagctgcgggag
tcgcaggagctgcggctgaagcggctctacccggggtcggtgctgaagccggcggcgtcg
caggtgctggtcccgcggccgaagacggcgcgggtcggcgggaagccgctggtcggccgg
gaactgctggcctggaccggcgagttcctgacgacggtcctgggctcctga
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