Staphylococcus haemolyticus JCSC1435: SH2464
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Entry
SH2464 CDS
T00250
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
sha
Staphylococcus haemolyticus JCSC1435
Pathway
sha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SH2464 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sha03021
]
SH2464 (rpoC)
03400 DNA repair and recombination proteins [BR:
sha03400
]
SH2464 (rpoC)
Enzymes [BR:
sha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SH2464 (rpoC)
Transcription machinery [BR:
sha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SH2464 (rpoC)
DNA repair and recombination proteins [BR:
sha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SH2464 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
BAE05773
NITE:
SH2464
UniProt:
Q4L3K4
LinkDB
All DBs
Position
complement(2461987..2465607)
Genome browser
AA seq
1206 aa
AA seq
DB search
MIDVNNFHYMKIGLASPEKIRSWSYGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
SCGKYKRVRYKGMVCDRCGVEVTKSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEEVIYFASYVVVDPGPTGLEKKSLLSEAEFREYYDKYPGQFVAKMGAEGIKDLLE
EINLDEELKSLRDELESATGQRLTRAIKRLEVVESFRNSGNNPAWMILDVLPIIPPEIRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIAVGPSLKMYQCGLPKE
MALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVWDVLEDVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVTTAYNADFDGDQMAVHVPLSKEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLERKDAMNTGTIFNDTNEVLKAYANGYVHLHTRIGVH
AKSFNNPTFTEAQNNKILATSVGKVIFNEIIPDSFAFINEPSQTNLEGKTPDKYFIDSTQ
LGEGGLKAYFEEQELIEPFNKKFLGNIIAEVFNRFSITDTSMMLDRMKDLGFKFSSKAGI
TVGVADIVVLPDKQDILDEHEKLVERVSKQFNRGLITEDERYNAVVEIWTDAKDQIQGEL
MQSLEKTNPIFMMSDSGARGNASNFTQLAGMRGLMAAPSGKIIELPITSSFREGLTVLEY
FISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVREEDCGTDRGLLVSDIKEGTEMI
EPFIERIEGRYSKETIRHPETDEIIIRPDELITAEIAKKITDAGIEQMYIRSAFTCNTRH
GVCEKCYGKNLATGEKVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGSDITQGLPRI
QEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASGTSRLKVEVGQ
SVERGEVLTEGSIEPKNFLAVAGLNATESYLLKEVQKVYRMQGVEIDDKHVEVMVRQMLR
KVRIIEAGDTKLLPGSLVDIHSFTDANREAFKERKRPATAKPVLLGITKASLETESFLSA
ASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIPAGTGMRRYSDVKYDKAETPVTETE
EAEIIE
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
ttgattgatgtaaataatttccattatatgaaaatcggtttagcctcacctgaaaaaatc
cgttcatggtcatacggtgaagtaaaaaaaccagaaacaatcaactatcgtacattgaaa
ccagaaaaagatggtcttttctgtgaaagaatttttggacctacaaaagactgggaatgt
agttgtggtaagtacaaacgtgtacgctacaaaggcatggtctgtgacagatgtggtgta
gaagtaactaaatctaaagtacgtcgtgaaagaatgggacacattgaattagctgctcca
gtttcacatatttggtatttcaaaggtattccaagtcgtatgggtcttttattagacatg
tctcctagagcattagaagaagttatttatttcgcttcatatgttgtagtagatccaggt
ccaacaggcttagagaaaaaatcattattatctgaagctgaattcagagaatattacgat
aaatacccaggtcaatttgtagctaaaatgggtgctgaaggtattaaagacctattagaa
gaaattaacttagacgaagaattaaaatcattgcgtgacgaattagaatctgcaactggt
caaagattgacacgtgcgattaaacgtttagaagttgttgaatcattcagaaactctggt
aataatccagcgtggatgattttagacgtacttccaattattccacctgaaatccgtcca
atggttcagttagatggtggacgtttcgcaacaagtgatttaaatgatttataccgtcgt
gtgattaaccgtaataatcgtttaaaacgtttattagacttaggtgctcctggcatcatc
gttcaaaacgaaaaacgtatgttgcaagaagcagttgatgcattaatcgataacggtcgt
cgtggtcgtccagttactggtccaggtaacagaccattgaaatcactttcacatatgttg
aaaggtaaacaaggtcgtttccgtcaaaacttacttggtaaacgtgttgactattcaggt
cgttcagttatcgctgttggtccaagcttaaaaatgtatcaatgtggattacctaaagaa
atggcgcttgaattgttcaagccattcgtaatgaaggaattagttcaacgtgaaattgct
actaacatcaaaaatgctaaaagtaaaattgagcgtatggacgatgaagtatgggacgta
ttggaagatgtaatcagagaacaccctgtattacttaaccgtgcacctactcttcacaga
ttaggtatccaagcattcgaacctacattagttgaaggtcgtgctatccgtctacaccca
cttgtaacaacagcttacaacgcggactttgacggtgaccaaatggccgttcacgttcct
ttatctaaagaagcacaagctgaagcacgtatgttaatgttagctgctcaaaacatcttg
aaccctaaagacggtaaacctgtcgtaacaccatcacaagatatggtattaggtaactat
tacctaacattagaacgtaaagatgcaatgaacactggtactatctttaatgatacaaac
gaagtgcttaaagcttatgcaaatggctatgttcatttacacactcgtattggtgtacat
gcgaaatcatttaacaaccctacattcacagaagctcaaaacaacaaaattttagctact
tcagtaggtaaagtgattttcaatgaaatcattcctgattcattcgcattcatcaatgaa
cctagtcaaacaaatcttgaaggtaaaacacctgacaaatactttattgattcaactcaa
ttgggtgaaggtggacttaaagcatactttgaagaacaagaacttattgaaccattcaat
aaaaaattcttaggtaatattattgccgaagtcttcaatagattcagtatcactgataca
tctatgatgcttgaccgtatgaaagatttaggtttcaaattctcatctaaagctggtatc
actgttggtgtagcagatattgttgtacttccagataaacaagacattttagatgagcac
gaaaaattagtagaacgtgtatctaaacaatttaatcgtggtttaattactgaagatgaa
cgttataatgccgttgttgaaatttggacagatgccaaagatcaaattcaaggcgaatta
atgcaatctcttgagaaaacaaacccaatcttcatgatgagtgattctggtgcacgtggt
aacgcatctaactttacacaattagctggtatgcgtggtttaatggccgcaccatcaggt
aaaattattgagttaccaatcacatcttcattccgtgaaggtttaacagtgttagaatac
ttcatctctacacacggtgcgcgtaaaggtcttgccgatacagcccttaaaacagctgac
tctggttaccttactcgtcgtcttgttgacgttgctcaagacgttattgttcgtgaagaa
gactgtggcacagaccgcggcttactagtttctgatatcaaagaaggtacagaaatgatc
gaaccattcatcgaacgtattgaaggacgttattctaaagaaacaattcgtcatcctgaa
actgatgaaatcatcatccgtccagacgaattaatcactgctgaaatcgctaagaaaatc
actgatgccggtattgaacaaatgtacatccgctcagcatttacatgtaacacacgtcac
ggtgtttgtgaaaaatgttacggtaaaaaccttgctactggtgaaaaagttgaagtgggt
gaagcagttggtacaatcgctgctcaatcaatcggtgaacctggtacccaacttacaatg
cgtacattccatacaggtggtgtagcaggaagcgatatcactcaaggtcttccacgtatt
caagagatcttcgaagcacgtaatccaaaaggtcaagctgtgattactgaaatcgaaggt
gtcgttgaagatattaaattagcaaaagatcgccaacaagaaattgttgttaaaggtgct
aatgaaacaagatcttacttagcttcaggtacttctagattaaaagtagaagtcggtcaa
tcagttgaacgtggtgaagtattaactgaaggttcaatcgaacctaagaacttcctagct
gttgctggtttaaatgcgactgaaagttacttacttaaagaagttcaaaaagtttatcgt
atgcaaggtgtagaaattgatgataaacacgttgaagtaatggtaagacaaatgttacgt
aaagttagaatcatcgaagctggtgatactaagttattacctggttcattggttgacatt
catagctttacagatgcaaacagagaagcgtttaaagaacgtaaacgtccagcaactgct
aaaccagtattgcttggtattacaaaagcgtctcttgaaactgaaagcttcttatcagca
gcatcattccaagaaacaactcgtgtacttacagatgcagcaattaaaggtaaacgcgac
gacttacttggacttaaagaaaacgttattattggtaagttaattccagctggtactggt
atgagacgttatagtgacgttaaatatgataaagctgaaacaccagttacagaaactgaa
gaagcagaaatcattgaataa
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