Staphylococcus haemolyticus JCSC1435: SH2465
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Entry
SH2465 CDS
T00250
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
sha
Staphylococcus haemolyticus JCSC1435
Pathway
sha03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
sha00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SH2465 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sha03021
]
SH2465 (rpoB)
03400 DNA repair and recombination proteins [BR:
sha03400
]
SH2465 (rpoB)
Enzymes [BR:
sha01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SH2465 (rpoB)
Transcription machinery [BR:
sha03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SH2465 (rpoB)
DNA repair and recombination proteins [BR:
sha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SH2465 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
BAE05774
NITE:
SH2465
UniProt:
Q4L3K3
LinkDB
All DBs
Position
complement(2465778..2469329)
Genome browser
AA seq
1183 aa
AA seq
DB search
MAGQVVQYGRHRKRRNYARISEVLELPNLIEIQTKSYDWFLKEGLLEMFRDISPIEDFTG
NLSLEFVDYRLGEPKYDLEESKNRDATYAAPLRVKVRLIIKETGEVKEQEVFMGDFPLMT
DTGTFVINGAERVIVSQLVRSPSVYFNEKIDKNGRENYDATIIPNRGAWLEYETDAKDVV
YVRIDRTRKLPLTVLLRALGFSNDQEIIDLLGDSEYLRNTLEKDGTENTEQALLEIYERL
RPGEPPTVENAKSLLYSRFFDPKRYDLASVGRYKANKKLHLKHRLFNQRLAEPIVNSETG
EIVAEEGTVLDRRKLDEIMEVLETNANSEVFELEGTVIDEPVEIQSIKVYVPNDEEGRTT
TVIGNALPDSEVKCITPADIIASMSYFFNLLNGIGYTDDIDHLGNRRLRSVGELLQNQFR
IGLSRMERVVRERMSIQDTDSITPQQLINIRPVIASIKEFFGSSQLSQFMDQANPLAELT
HKRRLSALGPGGLTRERAQMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSYARVNEFG
FIETPYRKVDLDTNSITDQIDYLTADEEDSYVVAQANSRLDENGRFLDDEVVCRFRGNNT
VMAKEKMDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMNTEAPFVGTG
MEHVAARDSGAAITAKYRGRVEHVESKEILVRRLVEENGTEHEGELDRYPLAKFKRSNTG
TCYNQRPIVSVGDVVEYNEILADGPSMELGEMALGRNVVVGFMTWDGYNYEDAVIMSERL
VKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVSENALKNLDDRGIVYVGAEVKDGDI
LVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGAGGIVLDVKVFNREEGDDT
LSPGVNQLVRVYIVQKRKIHVGDKMCGRHGNKGVISKIVPEEDMPYLPDGRPIDIMLNPL
GVPSRMNIGQVLELHLGMAAKNLGIHVASPVFDGANDDDVWSTIEEAGMARDGKTVLYDG
RTGEPFDNRISVGVMYMLKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTYKSDDTVGRVKTYEAIVKGENISRPSVPESFRVLMKELQSLGL
DVKVMDEQDNEIEMADVDDEDATERKVDLQQKDVPETQKETTD
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggtcaagttgtccaatatggaagacatcgtaaacgtagaaattatgcgagaatt
tcagaagtattagaattaccaaacttaatagaaattcaaactaaatcttacgactggttc
ctaaaagaaggtttattagaaatgttccgtgatatttctccaattgaagatttcacaggt
aacctttctttagaatttgtagattatcgattaggtgaaccaaaatatgatttagaagaa
tcaaaaaaccgtgacgctacttatgctgcacctcttcgtgttaaagtacgtctaataatc
aaagaaactggcgaagttaaagaacaagaagtatttatgggtgacttcccattaatgaca
gatacaggtacattcgtaatcaatggtgcagaacgtgtaatcgtgtctcaattagtacgt
tcaccatccgtttatttcaatgagaaaattgacaaaaacggtcgtgaaaactatgatgcg
acaattatccctaaccgtggtgcatggttagaatatgaaacagatgctaaagatgtagtt
tatgtacgtattgatagaacacgtaaattaccattaacagtattattacgtgctttaggc
ttctcaaacgatcaagaaattattgatttattaggagacagtgaatatttacgtaatacg
cttgaaaaagatggcactgaaaatactgagcaagcattattagaaatatacgaacgttta
cgtcctggtgagccaccaacagttgaaaatgcgaaaagtttactttattcacgctttttc
gaccctaaacgttatgatttagcaagtgttggtcgttataaagctaataaaaaattacac
ttaaaacaccgcttatttaatcaaagattagcagaaccaatcgttaatagcgaaactggt
gaaattgttgccgaagaaggtacagttctagaccgtcgcaaattagacgaaattatggaa
gttttagaaacaaatgctaatagtgaagtgtttgaattagaaggtacagttattgatgaa
cctgttgagattcaatcaatcaaagtttacgtaccaaatgatgaagaaggtcgtacgact
actgtaatcggtaatgcgttaccagattcagaagttaaatgtattacaccagcagatatc
attgcttcaatgagttatttctttaacttgttaaatggcattggttacacagacgatatt
gaccacttaggaaaccgtcgtttacgttcagttggtgaattattacaaaaccaattccgt
atcggtttatcaagaatggaacgtgttgtacgtgaaagaatgtcaattcaagatacagac
tctatcacaccacaacaattaattaatatccgtccggttattgcgtcaattaaagagttc
ttcggtagctctcaattatcacaattcatggaccaagctaacccattagctgagttaaca
cataaacgtcgtctttctgcattaggacctggtggtttaacacgtgaacgtgctcaaatg
gaagtacgtgacgttcactactctcactatggtcgtatgtgtccgatcgagactccagag
ggaccaaacattggtttgattaactcattatcaagttatgcacgtgtgaatgaatttggt
ttcattgaaacaccatatcgtaaagtagacttagacactaactctattacagatcaaatc
gactacttaactgctgatgaagaagatagctatgtagttgcccaagcgaactctcgctta
gatgaaaatggtcgtttcttagatgatgaagtcgtatgtcgtttccgtggtaataacaca
gttatggctaaagagaaaatggactacatggacgtatctcctaaacaagtagtttcagct
gcgacagcatgtattcctttccttgaaaatgatgactctaaccgtgcattaatgggtgca
aacatgcaacgtcaagcagtaccattgatgaacacagaagcaccatttgttggtacaggt
atggaacatgttgctgcacgtgactcaggcgctgcaattacagctaaatatagaggtcgc
gttgaacatgttgaatctaaagaaatcttagttcgtcgtttagtagaagaaaacggtact
gaacatgaaggtgaattagatcgttatccattagctaaattcaaacgttcaaacactggt
acttgttacaaccaacgtccaattgtttcagttggcgatgtcgttgagtataatgaaatt
ttagctgacggaccatcaatggaattaggtgaaatggcattaggtcgtaacgttgtcgtt
ggtttcatgacttgggacggttacaactatgaggatgctgttattatgagtgaacgtcta
gttaaagatgacgtttatacttcaattcatattgaagagtatgaatcagaagctcgtgat
actaaactaggacctgaagaaatcactcgtgatattccaaatgtttcagaaaatgcactt
aaaaacttagatgatcgtggtattgtctacgttggtgctgaagttaaagacggtgacatc
ttagtaggtaaagtaacgcctaaaggtgtgactgaattaacagctgaagaaagattatta
cacgctatcttcggtgaaaaagcacgtgaagtacgtgatacatcattacgtgtacctcac
ggagctggtggcatcgttctagatgttaaagtatttaaccgtgaagaaggcgatgatact
ttatctccaggcgttaaccaattagtacgtgtatacatcgtacaaaaacgtaaaatccat
gttggggacaaaatgtgtggtcgtcatggtaacaaaggggttatctctaagattgtgcct
gaagaagatatgccttacttaccagatggacgtccaattgatatcatgttaaacccactt
ggtgtaccatctcgtatgaacatcggacaagtattagaattacacttaggtatggctgct
aaaaacttaggcatccatgttgcatctccagtattcgatggtgcgaacgatgatgatgta
tggtcaacaatcgaagaagcaggtatggctcgtgacggtaaaacagtcttatacgatggt
agaactggtgaaccattcgataatcgtatttctgttggtgttatgtacatgcttaaactt
gcacacatggttgacgataaattacacgctcgttcaactggtccatactcactagttaca
caacaaccgcttggtggtaaagcacaattcggtggacaacgtttcggtgagatggaggta
tgggcactagaagcatacggtgctgcttacacattacaagaaatcttaacttacaaatct
gacgatacagtaggacgtgttaaaacttacgaagctatcgttaaaggtgaaaacatctct
agaccaagtgttccagaatcattccgcgtattgatgaaagaactacaaagtttaggttta
gatgtcaaagttatggatgaacaagataatgaaatcgaaatggctgatgttgatgatgaa
gatgcaactgagcgcaaagtagatttacaacaaaaagatgttcctgaaactcaaaaagaa
actactgactaa
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