Strigops habroptila (Kakapo): 115603605
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Entry
115603605 CDS
T08851
Symbol
DDX10
Name
(RefSeq) probable ATP-dependent RNA helicase DDX10
KO
K14776
ATP-dependent RNA helicase DDX10/DBP4 [EC:
5.6.2.7
]
Organism
shab
Strigops habroptila (Kakapo)
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shab03009
]
115603605 (DDX10)
Enzymes [BR:
shab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115603605 (DDX10)
Ribosome biogenesis [BR:
shab03009
]
Eukaryotic type
90S particles
Helicases
115603605 (DDX10)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
PAS_11
Snapin_Pallidin
Motif
Other DBs
NCBI-GeneID:
115603605
NCBI-ProteinID:
XP_030331441
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All DBs
Position
2:complement(106517202..106681730)
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AA seq
886 aa
AA seq
DB search
MRGGAASMGRAGGDGGGGGSAAMDPVRSFERWKKKYTRRTKRLRLQRKQRKRPEWQVERE
GIGRLVQRYPEINASEIQRFSDFPLSEKTLKGLQEAQYRMVTEIQRQTIGLALQGKDVLG
AAKTGSGKTLAFIVPALELLYRHQWTSADGLGVLIISPTRELAYQTFKVLRKVGKNHEFS
AGLIIGGKDLKEESERIHHINMLICTPGRLLQHMDETSYFYASDLQMLILDEADRILDMG
FADTMNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPEYVWVHEKAKFSTPATLDQN
YVVCELQQKVNMLYSFLRSHLKKKSIVFFASCKEVQYLFRVFCKLQPGLPVLALHGKQHQ
MKRMEVYTCFVRKKAAVLFATDIAARGLDFPAVNWVIQFDCPEDANTYIHRVGRTARYKE
GGEALLVLLPSEEKGMVEQLAQKKVPVSEIKVNPEKLTDIQKRMQAFLAQDQELKERAQR
CFVSYLRSVYLMKNKEVFDVFKLPLAEYALSLGLAMAPRVRFLQKVQKQLSAKKAADGTD
HVKEAGQNKNSPSSINGEEEEKCGTNFSGKVSLNKTKKKERRIEAEEFSASSEGAEESGE
SEDESKEVLEEEEEKEVPIPRRVPNPDSVQFFDDDDDDDDDDDTKELDLLTVKQRDVFGV
EAKDNPAPNVSKSKMKKKTTKTQEAKKILKKKFKVNTKIVFTEDGELVQQWPPVQKSSLA
QADEEDDASGINLDKAKEILREEDKFDKEEYRKKVKEKHREKRLKEKAARREARNNNAQA
EEETVAFLAHSGSEEEFDPSTLPDPDKYRDSDEEQNSESEDSYSELEEKSGRKKRSYSSS
TAAEEMLLKRKKAKFSQEEDPCLPLDTGLSLAEDEELVLHLLNSRS
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atgcggggcggtgcggccagcatgggccgggctggcggcgatggcggcggcggggggtcg
gcggcgatggacccggtgcgcagcttcgagcgctggaagaagaaatacacccggcggacg
aagaggctgcggctgcagcgcaagcagaggaagcggcccgagtggcaggtggagcgggag
ggcatcggccgcctggtgcagcgctaccctgagataaatgcaagtgaaattcaaagattt
tcagatttcccattgtcagagaagaccctaaaaggattgcaggaagctcagtatcgcatg
gtaacagagatacagaggcaaaccataggtttggctttacaaggtaaagatgtacttgga
gctgcaaagaccggatctggcaaaaccttggcttttattgtcccagctttggaactcctg
tatcgccaccaatggacttcggctgatggactgggagttttgataatatcgcctacccgg
gagctggcgtatcaaaccttcaaggttctgcgtaaagtgggaaagaatcatgagttctca
gctggccttatcattggaggaaaggatctgaaagaagagtctgaaagaatccaccacata
aatatgctaatttgcactccaggacggcttctgcaacacatggatgaaacttcctacttc
tatgcatctgatctgcaaatgttgattcttgatgaagctgatagaattctagacatgggg
tttgctgatacaatgaatgcaatcattgaaaatctacctaagaaacgccagaccttgctt
ttttctgcaacacaaacaaaatcagtgaaggaccttgcacggctgagtctgaaggatccg
gaatatgtttgggttcatgagaaagccaaattcagtaccccagcaactttggatcagaac
tatgttgtctgcgagcttcagcagaaagtaaacatgttatactctttcctgagaagtcac
ttgaaaaagaagagcattgtgttttttgcaagctgtaaagaggtccagtatctattccga
gtgttctgtaagcttcagcctggtcttcctgtactggcactccatggcaagcagcaccag
atgaagagaatggaagtctacacttgttttgttcggaaaaaagcagcagtactttttgct
acggatattgcagctcgtggccttgattttccagcagtgaactgggttattcagttcgat
tgtccagaagatgcaaacacatacatccacagagtaggaagaacagccagatacaaagaa
ggtggtgaagctttgttagtattgcttccctcagaagaaaagggtatggtggaacagttg
gcacagaagaaagtacctgtcagtgaaatcaaagttaatcctgaaaaacttacggacatc
caaaagaggatgcaagctttcttagctcaagatcaggagttaaaagagagagctcaaagg
tgttttgtatcctacttgcgctcagtttacttaatgaagaataaagaagtatttgatgtt
ttcaaattgcctctagcagagtatgccctatcacttggtcttgcaatggcacctcgtgtg
agatttcttcagaaagttcagaaacagctatctgcaaagaaggcagctgatgggacagat
cacgtgaaggaggcagggcaaaataaaaattccccctcctcgataaatggggaagaagag
gagaaatgtggaactaatttcagtggaaaggtgtctcttaacaaaacaaagaaaaaggag
agaaggatagaagctgaagaattttctgcttccagtgaaggtgctgaggagagtggtgag
tctgaggatgaatcaaaagaggtattggaggaggaggaagaaaaagaagttcccatacca
aggagggtaccaaacccagactccgtgcagttctttgatgatgatgatgatgacgacgat
gatgatgatactaaagaacttgatttactgacagtgaaacaacgagatgtttttggtgtg
gaagctaaagataatccagcaccgaatgtatcaaaatcaaagatgaagaaaaaaacaact
aaaacccaagaagccaaaaaaatcttgaagaagaaatttaaagtcaacacaaaaatagtg
tttactgaagatggagagttagtgcagcagtggccaccggtgcaaaaatccagtttggcg
caagcagatgaggaagatgatgccagtggtatcaacttagataaagctaaagaaatacta
cgggaagaagacaaatttgacaaggaagaatacaggaagaaagtaaaggaaaaacatagg
gagaaaaggctaaaagaaaaagcagcaaggagagaagccaggaataacaacgcacaggct
gaagaggaaacagtggcctttcttgctcacagtggaagtgaagaagagtttgatccaagt
actcttccagatcctgataaatacagagattctgatgaagagcagaattcagaaagcgaa
gacagctatagtgaacttgaggagaagagtggaagaaagaaaagaagctatagtagcagt
actgcagcagaagaaatgctgctgaaaagaaagaaagcgaaattcagccaagaggaggac
ccctgtttgccattagatactgggctttctctggcagaggatgaagagcttgtactacat
ctgctcaacagtcgcagctaa
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