Strigops habroptila (Kakapo): 115603801
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Entry
115603801 CDS
T08851
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
115603801 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shab03400
]
115603801 (LIG4)
Enzymes [BR:
shab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
115603801 (LIG4)
DNA repair and recombination proteins [BR:
shab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
115603801 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
LIG3_BRCT
Tox-REase-9
SKA1
Motif
Other DBs
NCBI-GeneID:
115603801
NCBI-ProteinID:
XP_030331977
LinkDB
All DBs
Position
2:65296889..65301415
Genome browser
AA seq
911 aa
AA seq
DB search
MASATASQPSPKRTVASHVPFADLCSTLERIQTCKSRPDKTKYFKEFLDSWRKFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLHLPKDGKDAAKLLNYRTP
AGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNVAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHNAFKSSIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMM
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVTGRVHVVRKRNARTRKEVI
DALNEAIDNREEGIMVKDPMSAYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAIAETPRPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTECTLRFPRIEKIREDKEWYECMT
SDMLADLRSKAEGKLASKHLHVDDYEPQEKKRKTVSKVKKIIGIAEQFKAPDLSSVNKIS
NVFEDVEFCVMTGTENNSKPELESRIAEWGGSVVQNPGPETYCVIVGAENVRVKNIIASN
KYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTADTDVTQLKE
VFSRMKDNEVMPLDMIAELEERYSWNSCQLSIFRGNTIYVDCYAVVNEPRTKICGTTLSI
RALELRFYGATVVSHLEEGVSHVVIGEDHSRVKEIKKLRRRFGKKFKIVSELWVTESVTE
EVPKNENQYLI
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcgactgcttcacagccttctcctaaaagaacggtggcctctcacgtgcct
tttgcagatctgtgttctactctggagcggatacagacgtgtaaatctcgtccggacaaa
accaagtatttcaaggagtttctggattcctggaggaaattccacgatgctcttcatcaa
aaggagaaagatgtcacagattctttttatccagctatgcgacttattcttccacagttg
gaaagagagaggatggcttatggaattaaagaaacaatgcttgcgaagctgtacattgaa
ctgcttcatttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
gctggctcacgtggggacgctggagattttgcaatgattgcatactttgtgttgaaacct
agaagcccaaaacagggcagactgacaatagaacaagttaatgaacacttagatgcaata
gctaacaataatgttgctaagaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcattggaacaaaagtggcttatccggatgattataaaggatctaaag
cttggtgtcagtcaacaaactatattttccatttttcatcctgatgctgttgaattgcac
aacgtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcacattgttttctgcctttaagccaatgcttgctgctattgctgat
gtccagcaaattgagaaacaaatgaataaccagacattctacatagaaactaagctggac
ggtgaacgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatactcagcagtttggtgcttccccccttgatggttcattgacaccatttatt
cataatgcatttaagagcagtatacaaaattgcattctcgatggtgaaatgatggcttac
aatcctgagacacaaacctttatgcaaaaaggaaacaggtttgacataaaaagaatgatg
gaggactctgatctgcagacttgcttctgtgtattcgatgtgttgatggttaatgatcag
aagttggggcacgaagtactaagcaaaaggtatgagatcttaagcagtgtatttacaccg
gtaacaggcagggtacacgttgtccgtaaaagaaatgccagaacaagaaaagaagtaatt
gatgctttaaacgaagcaatagataacagagaggaagggattatggtgaaagaccccatg
tccgcctacaaacctgacaaacgtggggaaggctggctaaaaatcaagccagaatatgtc
aatgggctgatggatgaactggaccttttaattgttggtggctactgggggaagggctcg
cgtggtggcatgatgtctcattttctgtgcgctattgcagagacgccccgtccgaatgaa
aaacctacagttttccactctatttgtcgtgttggctctggctatactatgaaggaattg
tatgacctaggtttgaaactggctaaacactggaagccctaccataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaattctgtc
atagttcagatcaaggcagctgagattgttaatagcgatatgtacaaaactgagtgtact
ttgagattcccccgaattgagaagataagagaggacaaagaatggtatgaatgcatgact
tccgacatgttagcagatctcaggagcaaagcagaagggaagctggcgtctaagcacctt
catgtagatgattatgagccacaagagaaaaaaaggaaaactgtatcaaaggtgaaaaag
ataattggaatagctgagcaatttaaagctcctgatctttctagtgttaacaagatttca
aatgtatttgaagatgttgagttttgtgttatgacaggaacggaaaacaactcaaagcct
gaactggaaagcagaatagccgaatggggtggcagtgtggtacagaacccagggccagag
acttactgtgtcattgtaggagctgagaatgtcagagtgaaaaatatcattgcttccaac
aaatatgatgtggtgagggcagagtggcttcttcagtgttttcaaaccaaaatgctagtg
ccttggcagccagcctttatgattcacatgtctcctgacacaaaagaacattttgctcgt
gagtatgattgttatggagacagctacacagcagacacagatgttacacaactcaaggaa
gtgttctcaagaatgaaagacaatgaggttatgcctttggacatgattgcagagttagaa
gaacgttactcatggaacagctgtcagctcagtatattcagaggaaacactatttatgtg
gactgctatgctgttgttaatgagcccagaaccaaaatctgtggaacaacactatcaatt
agagctttggagctgcgtttttatggtgcaacagtagtctcccaccttgaagagggtgtc
tcccatgttgttataggagaagatcattcccgggtaaaagagataaagaaactcaggaga
agatttgggaaaaaatttaaaatcgtatctgagctgtgggtaacagagtcagtgacagaa
gaagtcccaaagaatgaaaatcagtacttaatttaa
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