Strigops habroptila (Kakapo): 115605036
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Entry
115605036 CDS
T08851
Symbol
THOC1
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03013
Nucleocytoplasmic transport
shab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115605036 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
115605036 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115605036 (THOC1)
03041 Spliceosome [BR:
shab03041
]
115605036 (THOC1)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
115605036 (THOC1)
Spliceosome [BR:
shab03041
]
Complex C
Other components
EJC/TREX
115605036 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
115605036 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
bDLD3
Motif
Other DBs
NCBI-GeneID:
115605036
NCBI-ProteinID:
XP_030334678
LinkDB
All DBs
Position
1:complement(48851585..48873898)
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AA seq
665 aa
AA seq
DB search
MSPPLFSLPEARHRFTTSTREALNIKSIKPLLNAFNQIPGSENEKKCTLDQAFRVIVEEE
IINKAPCENLLAIISLAINGVTEGICTASTPFVLLGDVLDCLPLDQCDRIFTFVEKNVAT
WKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNTNEHESTLGQKHTEEREEGMDVEEGEMGDDEAPTSCSIPIDXXPCTENSGSL
QDYFRNPVQCYEKVSWKTFLXYSEEVLAVFKSYKLDDTQASRKKLEELKTGGEHVYFAKF
LTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKAVY
QLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERSQPEFQLGPPDSKPMRPV
RKRPAPEDFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSESREYMPTLEEFFEEAIEQ
ADPENMVENKYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKEL
PPPSEEIKTGEDEDEEDNDALLKENNESPEVQRDKAMTGDQIESVANRLGEQWKALAPYL
EMKDADIRQIESDSEDMKMRAKQLLVAWQDQEGAHATPENLVLALNKAGLGDLAESLSND
TESGS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgccgctgttcagcctgcccgaggcgcggcaccgcttcacgacatccaccaga
gaggccctgaatatcaaaagtatcaagccattattgaacgcatttaaccagattcctggg
agtgaaaatgaaaagaagtgtaccttggatcaagcttttagagttattgtagaagaagaa
ataataaacaaagctccatgtgaaaatctcctggcaattatttctcttgctattaatgga
gtcacagaaggtatctgcactgcatcaaccccttttgtgcttctgggggatgttctggat
tgcctgcccttggatcagtgtgacagaattttcacttttgtggagaagaatgttgccaca
tggaaatctaatacattttactctgcagggaaaaactacttgctacgaatgtgcaatgac
ctcctgagaagattatctaagtcacaaaacacggtcttctgtggaagaattcagctgttc
ttggctaggttatttccgctttcagaaaagtcaggacttaacttgcagagccagtttaac
ctggaaaatgtcactgtcttcaataccaatgaacatgagagcactctaggacagaagcac
accgaggaaagagaagaaggaatggacgtagaagaaggtgaaatgggagatgatgaagca
ccaacaagttgttccattccaatagattaataaccctgtacagaaaattctgggtcactt
caagattattttagaaatcctgtgcagtgctacgagaaggtctcatggaaaactttttta
tagtactcggaagaagttttggctgttttcaaaagttacaaactggacgacactcaggct
tcccgaaaaaagttggaagaactaaaaacaggaggagaacatgtatattttgcaaagttc
ttaactagtgaaaagctgatggatttacagctgagtgacagtaactttcgccgtcacatc
ttgttgcagtacctaatactatttcagtatctgaaaggacaggtcaaatttaaaagttca
aactatgttcttacagatgaacagtcactttggattgaagatactacaaaagcggtttac
cagcttctttcagaaaatcctccagatggggaaagattctcaaagatggtagagcatata
ttaaatactgaagaaaactggaactcatggaaaaatgagggctgcccaagctttgtgaaa
gaaagatctcagccagagtttcagcttggacctcctgattctaagccaatgaggcctgtg
agaaagagacctgctccagaggacttcttaggaaaaggaccaaataaaaaaatccttatg
gggaatgaggaactgacccgcctttggaatttatgtcctgataacatggaagcttgtaaa
tcggagagcagggaatatatgccaacgttggaggaattttttgaagaagctattgaacaa
gcagaccctgaaaacatggttgaaaataagtataaggctgtgaacaattctaactatggc
tggagagcactaaggcttctagcacgcagaagtccccacttcttccagccaacaaaccag
caattcaagagtttacctgaatatctagaaaacatggtaatcaaattagccaaggagctg
cctcctccttctgaagaaataaaaacaggcgaggatgaagatgaggaagataatgatgct
ttattaaaagaaaacaatgaaagtccagaggtgcaacgggacaaagccatgacgggcgat
cagatcgagtcagttgcgaacaggcttggggagcagtggaaggccctggccccctacttg
gaaatgaaggatgccgacatccggcagatcgagtcagacagcgaggacatgaagatgaga
gccaagcagctgctggtcgcctggcaggaccaggagggcgcccatgccacccccgagaac
ctggttctggcgctgaacaaagccgggttaggtgaccttgcggaaagcctgagcaatgac
accgagagcggcagctaa
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