KEGG   Strigops habroptila (Kakapo): 115609071
Entry
115609071         CDS       T08851                                 
Symbol
SMNDC1
Name
(RefSeq) survival of motor neuron-related-splicing factor 30
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
shab  Strigops habroptila (Kakapo)
Pathway
shab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:shab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    115609071 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:shab03041]
    115609071 (SMNDC1)
Spliceosome [BR:shab03041]
 Complex A
  U2 snRNP components
   U2 related factors
    115609071 (SMNDC1)
 Complex B
    115609071 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    115609071 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR
Other DBs
NCBI-GeneID: 115609071
NCBI-ProteinID: XP_030344640
LinkDB
Position
5:complement(71706848..71718127)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNAENEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSSASALPSHSWKVGDRCMAIWSEDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLF
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcggaagaccttgctaagcagttagctagctacaaagctcagcttcagcaagttgag
gctgccttgtctgggaatgcagaaaacgaagatttgctaaaactgaagaaagacttacag
gaagtcatagaattaaccaaagatctcctttcaacacaaccttcagaaactcttgcaagt
tctgacagctctgcttctgccctgcccagccactcctggaaggttggggataggtgtatg
gcgatatggagtgaggatggacagtgttatgaagctgagattgaagaaatagatgaggag
aacggaacagctgcagtcacatttgctggatatggcaatgctgaagttacacctctcttc
aacctcaagcctgtggaagagggaagaaaagcaaaagaggacagtggcaacaaacccatg
tccaaaaaagagatgatagcccagcaacgagagtataaaaagaagaaagctttgaaaaaa
gctcagagaattaaagaactcgaacaggaacgagaggaccagaaagtcaagtggcagcag
tttaacaacagagcctattcgaaaaacaaaaaaggccaggtgaagaggagtatttttgct
tcccctgagagcgtaactggcaaggttggagtcggaacgtgtggaattgcagacaaacct
atgacacagtatcaagatacctctaaatacaatgtcaggcatttaatgcctcagtaa

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