Strigops habroptila (Kakapo): 115612619
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Entry
115612619 CDS
T08851
Symbol
SIN3A
Name
(RefSeq) paired amphipathic helix protein Sin3a isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
115612619 (SIN3A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
shab03036
]
115612619 (SIN3A)
Chromosome and associated proteins [BR:
shab03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
115612619 (SIN3A)
REST complex
115612619 (SIN3A)
Heterochromatin formation proteins
Other heterochromatin formation proteins
115612619 (SIN3A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
Motif
Other DBs
NCBI-GeneID:
115612619
NCBI-ProteinID:
XP_030352982
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All DBs
Position
9:19795398..19828962
Genome browser
AA seq
1349 aa
AA seq
DB search
MKGMLLLWGILHVHVSNQQLVVAPVGKGSRCATEGVRGKPAWEMDRKWKDWLGYWCPEQT
GVHVGFVVLPEHEFRMKRRLDEQESPVYASQQRRITSSTEAFQHQHRVLAPAPPVYEAVS
ETMQSATGIQYSVTPSYQVSAVPQSSGSHGPAIAAVHSGHHHTAPVQPHGSQVVQSHAHP
TPPAVPVQGQQQFQRLKVEDALSYLDQVKLQFGSQPQVYNDFLDIMKEFKSQSIDTPGVI
SRVSQLFKGHPDLIMGFNTFLPPGYKIEVQTNDMVNVTTPGQVHQIPTHGLQPQPQPQPQ
HQSQPSAQSTPTPAQPAPQPPPAKISKPSQLQAHTPASQQTPPIPPYASPRSPPVQPHTP
VTISLGTTPSLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEA
GGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFLPDANSSVLLSKTTAEKVESVRNDHG
GTVKKPQLNNKQQRPNQNGCQIRRHSGTGATPPVKKKPKLLGLKDQSLAEASKHGVGTES
LFFEKVRKALRSTEAYENFLRCLVIFNQEVISRAELVQLVSPFLGKFPELFTWFKNFLGY
KESVHMETYPKERATEGIAMEIDYASCKRLGSSYRALPKSYQQPKCTGRTPLCKEVLNDT
WVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLATIRVLEAIQKKLSRLS
AEEQAKFRLDNTLGGTSEVIHRKALQRIYADKAADIIDGLRKNPSVAVPIVLKRLKMKEE
EWREAQRGFNKVWREQNEKYYLKSLDHQGINFKQNDTKVLRSKSLLNEIESIYDERQEQA
SEDNAGVPTGPHLSLAYEDKQILEDAASLIIHHVKRQTGIQKEDKYKIKQIMYHFIPDLL
FAQRGELSDVEEEEEEEMDVDEATGAAKKHNGVGGSPPKTKLMFNNTTAQKLRGMDEVYN
LFYVNSNWYIFMRLHQILCLRLLRICTQAERQIEEETREREWEREVLGIKRDKSDSPAIQ
LRLKEPMDIDVEDYYPAFLDMVRNLLDGNMDSSQYEDSLREMFTIHAYIAFTMDKLIQSI
VRQLQHIVSDEICVQVTDLYLSENNNGATGGLLASQSSRSLLEAAYQRKAEQLMSEENCF
KLMFIQSRGQVQLTIELLDTEEENSDDPVEAERWSDYVERYVNSDSTSPELREHLAQKPV
FLPRNLRRIRKCQRGREQQEKEGKEGNSKKSMENVESLDKLECKFKLNSYKMVYVIKSED
YMYRRTALLRAQQSHERVSKRLHQRFQAWVDKWTKEHVPREMAAETNKWLMGEGLEGLVP
CTTTCDTETLHFVSINKYRVKYGTIFKTP
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgaagggaatgctcctgctttggggaattttgcatgtacatgtctcaaaccagcagctc
gtggttgctcctgtgggcaaggggagccgttgtgccactgaaggggtaaggggcaaacca
gcctgggagatggacagaaagtggaaggactggctggggtactggtgtccagagcagacg
ggtgtccacgttggtttcgttgtgcttcccgagcatgagttcagaatgaagcggcgattg
gatgagcaggagtcacccgtgtatgcgtcgcagcagagacgtatcaccagcagcaccgaa
gccttccaacaccagcaccgcgtgctcgccccggcacctccggtatatgaggcggtttcg
gagaccatgcagtctgccacggggattcagtactcagtaactcccagctaccaggtgtcg
gccgtgccgcagagctcgggcagccatgggccagccatcgcggccgtgcacagcggccac
caccacactgcccccgtgcagccccacgggagccaagtggtgcagagccacgctcacccc
accccgccagccgtgcccgtgcaggggcagcagcagttccagcgcctcaaggtggaggat
gcgctgtcttaccttgaccaggtgaagctgcagtttggtagccagccacaggtctacaat
gacttcttggatataatgaaggaatttaaatctcaaagtattgacactccaggagtgatc
agccgcgtatcgcagctcttcaagggccacccagacttgatcatgggtttcaacaccttc
ttgccacctggttacaagattgaggtgcagacgaatgatatggtgaacgtgacaacacca
gggcaggttcaccagatccccactcatggcttgcagcctcagccccagccccagccgcag
catcagtcgcagccttcagcgcaatcaaccccgacaccagcacagccagcgccgcagccg
cctcctgccaaaatcagtaagccatcacagttgcaggcacatacccctgccagccagcag
actcccccgattccaccatacgcatcaccacgctcgccaccggtccaacctcacacgcct
gtgacaatctctctgggaaccaccccatccctgcagaacaatcaacccgttgagtttaat
catgccatcaactatgtcaacaagatcaagaatcggttccagggccagccagacatctac
aaagccttcctggagatcctccatacgtatcagaaagagcagcgcaatgccaaggaggca
ggaggtaactacacgccagcgctgacagagcaggaggtgtacgcgcaggtggctcgcctc
ttcaagaaccaggaggatctgctctcggagttcgggcagttcctgcctgatgccaacagc
tccgtgctgttgagtaagacgactgcagagaaagtggaatcagtaagaaacgatcacggt
ggcacggtgaagaagccacagctcaacaacaaacagcaaagacccaaccagaacggctgt
cagatccggcggcactcgggaactggtgctacccctccggtgaagaagaaaccgaagctg
ctgggtttaaaagaccagtcgttggcagaagccagcaaacatggtgtggggacagaatct
ctcttcttcgagaaggtccgcaaggctctgcggagcacagaagcatacgagaacttcctg
cgttgcctggttattttcaaccaggaggtcatctcccgggctgagctcgtgcagctcgtc
tctcccttcctggggaaattcccagaattgttcacttggtttaaaaactttctggggtat
aaagagtctgttcacatggagacgtatccgaaggagcgggctaccgaggggattgccatg
gagatagactatgcctcctgtaaaagactgggctccagctaccgagccttacccaagagc
taccagcaacccaagtgcacggggcggactccactctgtaaagaggttttgaatgacact
tgggtctctttcccatcctggtctgaagactccacatttgtgagctccaagaaaacgcaa
tatgaagagcacatctacaggtgcgaggatgagcgttttgagctggatgttgtcttggag
accaacctggcaacaatccgtgtccttgaggcaatccaaaagaaactctcgcgcttgtct
gccgaggagcaggccaaattccggctggacaacaccctgggtggcacctcggaggtgatc
caccgcaaggctctccagaggatatatgctgacaaagcagctgacatcattgatgggctt
cggaagaacccatccgtggctgttcccatcgtactgaaaaggttaaagatgaaagaggaa
gagtggcgagaagcccagagaggatttaacaaagtctggcgagagcagaatgagaagtat
tacctgaaatccttggaccaccagggcatcaacttcaagcagaatgataccaaggtcctg
aggtcaaagagtctcctcaatgagattgaaagcatctatgatgagaggcaagagcaggct
tcagaagacaatgctggagtccccacaggtccacacctatcgctagcctatgaagacaag
cagatcctggaagatgctgcttctctcatcatccaccacgtgaagcggcagacgggaatc
cagaaagaggacaagtacaaaatcaagcagatcatgtatcacttcattccagacctgctg
tttgctcagcgaggtgaactctcggatgtggaagaggaggaagaagaggaaatggatgtg
gatgaagctactggggctgcaaaaaagcacaacggtgttgggggcagtcctcccaaaacc
aagctgatgttcaacaacacgacggcccagaagctgcggggcatggatgaggtctacaac
ctcttctacgtgaacagcaactggtacatattcatgcggctgcatcagatcctgtgcttg
aggctgctgaggatctgcacccaggccgagcggcagatcgaagaggagacacgggaaagg
gagtgggagagggaagtgctgggcataaagcgagacaagagcgacagtcctgccatccag
ctgcgattgaaggagccgatggacatcgatgtggaggattattacccggccttcctggac
atggtgcgcaacctcctggatgggaacatggactcgtcgcagtacgaggactccttgcgt
gaaatgttcaccatccacgcctacatcgccttcaccatggacaagctgatccagagcatc
gttcgacagctccagcacatagtgagcgatgagatctgtgtgcaggtaacagacctctac
ctgtcagagaacaacaacggagcaacaggaggtcttctcgcttcccagtcttcccgtagc
cttctggaggccgcctaccagcgcaaagcggagcagctcatgtcagaggagaactgcttc
aagctgatgttcattcagagcagaggtcaagttcagttaaccattgaactgctggataca
gaagaggagaactctgatgaccctgtagaagcagagcgctggtcagactacgtggagcgg
tacgtcaactcggattctacctcccctgagctccgggagcacctggcccagaaaccagtc
ttcctgcccaggaatctcaggcggatccgtaagtgtcagcgcggtcgggagcagcaggag
aaggaagggaaggagggaaacagtaagaagtccatggagaacgtggagagcttggacaag
ctggagtgtaaattcaaactgaactcctataagatggtgtacgtgatcaaatcggaggat
tacatgtacaggaggaccgctctgctgcgagctcagcagtcccacgaaagagtgagcaag
cggctgcaccagcggttccaggcctgggtggacaaatggaccaaggagcacgtgccccgc
gaaatggcagccgagacaaacaaatggctcatgggcgaagggttggaggggttggtgccc
tgcaccaccacgtgtgacacagagaccctgcactttgtgagcattaacaagtaccgcgtc
aaatacggcacgatattcaagacaccctaa
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