Strigops habroptila (Kakapo): 115613337
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Entry
115613337 CDS
T08851
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
shab
Strigops habroptila (Kakapo)
Pathway
shab03013
Nucleocytoplasmic transport
shab03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
shab00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115613337 (UPF3B)
03015 mRNA surveillance pathway
115613337 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shab03019
]
115613337 (UPF3B)
Messenger RNA biogenesis [BR:
shab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115613337 (UPF3B)
mRNA cycle factors
P-body specific factors
115613337 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
115613337
NCBI-ProteinID:
XP_030354531
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Position
9:complement(34231786..34240073)
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AA seq
480 aa
AA seq
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MKEDKENARPKERRGAAAGPGALLGAGSGPAAAGDSRTGAAELDRLERPKDKKETLSKVV
IRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRDRF
DGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDEKL
TSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEERR
KWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLERKEKSKKLEK
EALREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDYERDREYERAQREKLRR
QEEERRRQKERFEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSSTDKSEKVTKDDKK
EDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPADQGADKKQESETSNVKEEE
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgcgaggcccaaggagcggcgcggggccgccgccgggccc
ggggctctgctgggggcggggtcgggccccgctgccgccggggacagcaggacgggcgcc
gctgagctcgaccgcctcgagcggcccaaggacaagaaggagacgctcagcaaggtggtg
atccggcggctgccgcccagcctgacgaaggagcagctggaggagcacctccagcccctg
cccgagcatgactacttcgagttcttcgccaacgactccagcttgtacccccacatgttc
tcgagagcctacatcaacttcaaaaaccaggaagacatagtcctcttcagggatcgcttt
gacggctatgtttttgtcgaccacaaaggtcaggaatatgctgccatagttgagtttgca
cctttccaaaaagctgcaaaaaagaagagtaagaaaaaggatgcgaaaactggaactatt
gaagatgatccagagtacaagaagtttctggaaagttacagcgcagatgatgaaaaatta
acttccactccggaaactttgttggaggaaatagaggcaagaaacaaagagctcatagct
aaaaagactactcctttattgaacttcctgaaaaataaacagaggctgagagaagaaaaa
agagaggagaggaggaggagagaattggaaagaaaaagacaaagagaagaagaaagaaga
aaatggaaagaggaggagagaaggaagagaaaagaagcggaaaaactgaagaaggtagac
agatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagctgcttaag
aagcctgaaaaagatgaaaaagacttggagagaaaagaaaaatccaagaaactggaaaaa
gaggctctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgatggggag
acaaaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagggaccga
gatagagattatgaaagagacagagaatatgagagagcacagagggagaaactgaggcgc
caagaagaggagcgtcgaaggcagaaagagcgctttgagaaagagaaggtttttagaaga
aaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaaagtgat
cttacagactttaccagcagcacggacaaatctgagaaagtaaccaaagacgataaaaaa
gaggatacaattaagagggatcgtatcagaaacaaggatcgtccagcaatgcagctgtac
cagccaggagcccgaagccgaagcagattgtgtcagtatgaagacagtgctgcaaagcct
gcagatcagggtgcggataagaaacaagagagtgagaccagtaatgtgaaggaagaagag
tga
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